Sequence Similarity Clusters for the Entities in PDB 4GSK

Entity #1 | Chains: A,B
Ubiquitin-like modifier-activating enzyme ATG7 protein, length: 615 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32242
95 % 3 4 11460 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 3 4 11311
70 % 3 4 10722
50 % 3 4 9701
40 % 3 4 8877
30 % 3 4 7810
Entity #2 | Chains: Y,Z
Ubiquitin-like-conjugating enzyme ATG10 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44382
95 % 2 2 19826 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.9
PDBFlex
90 % 2 2 19286
70 % 2 2 17804
50 % 2 2 15438
40 % 2 2 13725
30 % 2 2 11743

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures