Sequence Similarity Clusters for the Entities in PDB 4GSK

Entity #1 | Chains: A,B
Ubiquitin-like modifier-activating enzyme ATG7 protein, length: 615 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31614
95 % 3 4 11203 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 3 4 11056
70 % 3 4 10496
50 % 3 4 9506
40 % 3 4 8700
30 % 3 4 7661
Entity #2 | Chains: Y,Z
Ubiquitin-like-conjugating enzyme ATG10 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43532
95 % 2 2 19418 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.9
PDBFlex
90 % 2 2 18903
70 % 2 2 17468
50 % 2 2 15165
40 % 2 2 13494
30 % 2 2 11559

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures