Sequence Similarity Clusters for the Entities in PDB 4GSK

Entity #1 | Chains: A,B
Ubiquitin-like modifier-activating enzyme ATG7 protein, length: 615 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30382
95 % 3 4 10792 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 3 4 10653
70 % 3 4 10095
50 % 3 4 9153
40 % 3 4 8385
30 % 3 4 7380
Entity #2 | Chains: Y,Z
Ubiquitin-like-conjugating enzyme ATG10 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41952
95 % 2 2 18655 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.9
PDBFlex
90 % 2 2 18166
70 % 2 2 16817
50 % 2 2 14626
40 % 2 2 13024
30 % 2 2 11145

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.