Sequence Similarity Clusters for the Entities in PDB 4GQ9

Entity #1 | Chains: L
Chikungunya virus neutralizing antibody 9.8B Fab fragment light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 7555
95 % 8 10 3692 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 138 148 144
70 % 2314 2479 1
50 % 4692 5021 1
40 % 4692 5021 1
30 % 5594 5951 1
Entity #2 | Chains: H
Chikungunya virus neutralizing antibody 9.8B Fab fragment heavy chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 7536
95 % 1 3 8105
90 % 1 3 8042
70 % 2270 2429 2
50 % 4693 5021 1
40 % 4693 5021 1
30 % 5595 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures