Sequence Similarity Clusters for the Entities in PDB 4GQ9

Entity #1 | Chains: L
Chikungunya virus neutralizing antibody 9.8B Fab fragment light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 7374
95 % 8 10 3611 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 138 148 140
70 % 2238 2392 1
50 % 4536 4843 1
40 % 4536 4843 1
30 % 5372 5705 1
Entity #2 | Chains: H
Chikungunya virus neutralizing antibody 9.8B Fab fragment heavy chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 7356
95 % 1 3 7924
90 % 1 3 7867
70 % 2194 2342 2
50 % 4537 4843 1
40 % 4537 4843 1
30 % 5373 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures