Sequence Similarity Clusters for the Entities in PDB 4GQ9

Entity #1 | Chains: L
Chikungunya virus neutralizing antibody 9.8B Fab fragment light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 8051
95 % 8 10 3631 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 138 148 146
70 % 2367 2553 1
50 % 4809 5180 1
40 % 5382 5834 1
30 % 6692 7269 1
Entity #2 | Chains: H
Chikungunya virus neutralizing antibody 9.8B Fab fragment heavy chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 8050
95 % 1 3 8124
90 % 1 3 8053
70 % 2332 2511 2
50 % 4810 5180 1
40 % 5383 5834 1
30 % 6693 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures