Sequence Similarity Clusters for the Entities in PDB 4GPT

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 51 489
95 % 24 74 310
90 % 25 78 311
70 % 26 81 343
50 % 26 81 400
40 % 27 82 419
30 % 354 775 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65209
95 % 12 31 1784
90 % 12 31 1821
70 % 12 31 1849
50 % 12 32 1745
40 % 12 32 1754
30 % 12 32 1706
Entity #3 | Chains: C
Exportin-1 protein, length: 1060 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30182
95 % 2 2 25040 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 24211
70 % 2 2 22033
50 % 2 13 3257
40 % 15 47 1069
30 % 15 47 1043

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.