Sequence Similarity Clusters for the Entities in PDB 4GPT

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 51 486
95 % 24 74 305 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.9
PDBFlex
90 % 25 78 304
70 % 26 81 335
50 % 26 81 396
40 % 27 82 414
30 % 352 768 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64316
95 % 12 31 1763 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 12 31 1800
70 % 12 31 1827
50 % 12 32 1724
40 % 12 32 1736
30 % 12 32 1685
Entity #3 | Chains: C
Exportin-1 protein, length: 1060 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29677
95 % 2 2 24596 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 23797
70 % 2 2 21749
50 % 2 13 3214
40 % 15 47 1059
30 % 15 47 1037

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.