Sequence Similarity Clusters for the Entities in PDB 4GPT

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 51 502
95 % 24 74 323 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 25 78 321
70 % 26 81 358
50 % 26 81 416
40 % 27 82 437
30 % 369 797 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66131
95 % 12 31 1815 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 12 31 1851
70 % 12 31 1881
50 % 12 32 1777
40 % 12 32 1785
30 % 12 32 1730
Entity #3 | Chains: C
Exportin-1 protein, length: 1060 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30610
95 % 2 2 25391 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 24538
70 % 2 2 22303
50 % 2 13 3306
40 % 15 47 1089
30 % 15 47 1070

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures