Sequence Similarity Clusters for the Entities in PDB 4GP8

Entity #1 | Chains: A
Cytochrome c oxidase subunit 1 protein, length: 568 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49872
95 % 11 36 1433
90 % 11 36 1460
70 % 11 36 1468
50 % 11 36 1526
40 % 11 36 1542
30 % 11 36 1522
Entity #2 | Chains: B
Cytochrome c oxidase subunit 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 29 1443
95 % 11 36 1488 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 11 36 1518
70 % 11 36 1519
50 % 11 36 1567
40 % 11 36 1585
30 % 11 36 1557
Entity #3 | Chains: C
Cytochrome c oxidase polypeptide 2A protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 36 1108
95 % 11 36 1504 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.3
PDBFlex
90 % 11 36 1535
70 % 11 36 1536
50 % 11 36 1577
40 % 11 36 1597
30 % 11 36 1572

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.