Sequence Similarity Clusters for the Entities in PDB 4GP8

Entity #1 | Chains: A
Cytochrome c oxidase subunit 1 protein, length: 568 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52556
95 % 11 36 1517 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 11 36 1545
70 % 11 36 1557
50 % 11 36 1614
40 % 11 36 1623
30 % 11 36 1603
Entity #2 | Chains: B
Cytochrome c oxidase subunit 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 29 1537
95 % 11 36 1578 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 11 36 1609
70 % 11 36 1613
50 % 11 36 1666
40 % 11 36 1679
30 % 11 36 1647
Entity #3 | Chains: C
Cytochrome c oxidase polypeptide 2A protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 36 1189
95 % 11 36 1595 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.3
PDBFlex
90 % 11 36 1626
70 % 11 36 1632
50 % 11 36 1678
40 % 11 36 1692
30 % 11 36 1663

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures