Sequence Similarity Clusters for the Entities in PDB 4GP5

Entity #1 | Chains: A
Cytochrome c oxidase subunit 1 protein, length: 568 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50453
95 % 9 36 1446 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 9 36 1474
70 % 9 36 1482
50 % 9 36 1534
40 % 9 36 1553
30 % 9 36 1532
Entity #2 | Chains: B
Cytochrome c oxidase subunit 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 29 1456
95 % 9 36 1505
90 % 9 36 1535
70 % 9 36 1533
50 % 9 36 1578
40 % 9 36 1599
30 % 9 36 1568
Entity #3 | Chains: C
Cytochrome c oxidase polypeptide 2A protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 36 1119
95 % 9 36 1522 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.3
PDBFlex
90 % 9 36 1552
70 % 9 36 1551
50 % 9 36 1589
40 % 9 36 1612
30 % 9 36 1584

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.