Sequence Similarity Clusters for the Entities in PDB 4GP5

Entity #1 | Chains: A
Cytochrome c oxidase subunit 1 protein, length: 568 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49811
95 % 8 35 1502
90 % 8 35 1533
70 % 8 35 1535
50 % 8 35 1573
40 % 8 35 1596
30 % 8 35 1569
Entity #2 | Chains: B
Cytochrome c oxidase subunit 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 28 1546
95 % 8 35 1531 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 8 35 1558
70 % 8 35 1574
50 % 8 35 1608
40 % 8 35 1631
30 % 8 35 1597
Entity #3 | Chains: C
Cytochrome c oxidase polypeptide 2A protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 35 1137
95 % 8 35 1545 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.3
PDBFlex
90 % 8 35 1569
70 % 8 35 1587
50 % 8 35 1619
40 % 8 35 1641
30 % 8 35 1610

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.