Sequence Similarity Clusters for the Entities in PDB 4GP4

Entity #1 | Chains: A
Cytochrome c oxidase subunit 1 protein, length: 568 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51588
95 % 12 36 1482 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 12 36 1513
70 % 12 36 1521
50 % 12 36 1576
40 % 12 36 1592
30 % 12 36 1567
Entity #2 | Chains: B
Cytochrome c oxidase subunit 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 29 1498
95 % 12 36 1542 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 12 36 1577
70 % 12 36 1576
50 % 12 36 1626
40 % 12 36 1643
30 % 12 36 1610
Entity #3 | Chains: C
Cytochrome c oxidase polypeptide 2A protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 36 1159
95 % 12 36 1558 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.3
PDBFlex
90 % 12 36 1594
70 % 12 36 1592
50 % 12 36 1636
40 % 12 36 1655
30 % 12 36 1625

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures