Sequence Similarity Clusters for the Entities in PDB 4GNK

Entity #1 | Chains: A,C
Guanine nucleotide-binding protein G(q) subunit alpha protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 7005
95 % 10 11 3975 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 10 11 4013
70 % 10 11 3962
50 % 74 77 423
40 % 91 97 360
30 % 93 99 351
Entity #2 | Chains: B,D
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 protein, length: 1235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30380
95 % 1 1 25189 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 24357
70 % 1 1 22157
50 % 1 1 19191
40 % 1 1 17103
30 % 1 1 14699
Entity #3 | Chains: E
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57877
95 % 1 1 41032
90 % 1 1 39196
70 % 1 1 34771
50 % 1 1 29677
40 % 1 1 26185
30 % 1 1 22219

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.