Sequence Similarity Clusters for the Entities in PDB 4GNK

Entity #1 | Chains: A,C
Guanine nucleotide-binding protein G(q) subunit alpha protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 8437
95 % 10 11 4456 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.0
PDBFlex
90 % 10 11 4348
70 % 10 11 4338
50 % 92 106 364
40 % 94 108 377
30 % 94 108 377
Entity #2 | Chains: B,D
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 protein, length: 1235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39050
95 % 1 1 33036 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 27915
70 % 1 1 25153
50 % 1 1 22590
40 % 1 1 19017
30 % 1 1 16627
Entity #3 | Chains: E
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53932
95 % 1 1 42338
90 % 1 1 40326
70 % 1 1 35604
50 % 1 1 30238
40 % 1 1 26487
30 % 1 1 22105

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures