Sequence Similarity Clusters for the Entities in PDB 4GNK

Entity #1 | Chains: A,C
Guanine nucleotide-binding protein G(q) subunit alpha protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 6793
95 % 10 11 3856 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.1
PDBFlex
90 % 10 11 3893
70 % 10 11 3839
50 % 74 77 410
40 % 91 97 343
30 % 93 99 335
Entity #2 | Chains: B,D
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 protein, length: 1235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29414
95 % 1 1 24390 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 23598
70 % 1 1 21570
50 % 1 1 18733
40 % 1 1 16698
30 % 1 1 14347
Entity #3 | Chains: E
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56316
95 % 1 1 39916
90 % 1 1 38161
70 % 1 1 33941
50 % 1 1 29003
40 % 1 1 25593
30 % 1 1 21707

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.