Sequence Similarity Clusters for the Entities in PDB 4GNK

Entity #1 | Chains: A,C
Guanine nucleotide-binding protein G(q) subunit alpha protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 7125
95 % 10 11 4034 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 10 11 4072
70 % 10 11 4017
50 % 74 77 436
40 % 91 97 384
30 % 93 99 372
Entity #2 | Chains: B,D
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 protein, length: 1235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30831
95 % 1 1 25558 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 24701
70 % 1 1 22441
50 % 1 1 19440
40 % 1 1 17319
30 % 1 1 14887
Entity #3 | Chains: E
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58687
95 % 1 1 41593
90 % 1 1 39712
70 % 1 1 35204
50 % 1 1 30046
40 % 1 1 26504
30 % 1 1 22488

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures