Sequence Similarity Clusters for the Entities in PDB 4GKQ

Entity #1 | Chains: A,B
SPINDLE POLE BODY-ASSOCIATED PROTEIN VIK1 protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20448
95 % 2 2 18026 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.2
PDBFlex
90 % 2 2 17659
70 % 2 2 16395
50 % 2 2 14320
40 % 2 2 12815
30 % 3 3 9466

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures