Sequence Similarity Clusters for the Entities in PDB 4GKQ

Entity #1 | Chains: A,B
SPINDLE POLE BODY-ASSOCIATED PROTEIN VIK1 protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19209
95 % 2 2 17010 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.4
PDBFlex
90 % 2 2 16660
70 % 2 2 15494
50 % 2 2 13563
40 % 2 2 12155
30 % 3 3 8944

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.