Sequence Similarity Clusters for the Entities in PDB 4GKP

Entity #1 | Chains: A,B
Spindle pole body-associated protein VIK1 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20480
95 % 1 2 18051 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.2
PDBFlex
90 % 1 2 17682
70 % 1 2 16414
50 % 1 2 14335
40 % 1 2 12829
30 % 2 3 9471

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures