Sequence Similarity Clusters for the Entities in PDB 4GKP

Entity #1 | Chains: A,B
Spindle pole body-associated protein VIK1 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19016
95 % 1 2 16845 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.4
PDBFlex
90 % 1 2 16502
70 % 1 2 15350
50 % 1 2 13450
40 % 1 2 12051
30 % 2 3 8874

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.