Sequence Similarity Clusters for the Entities in PDB 4GKP

Entity #1 | Chains: A,B
Spindle pole body-associated protein VIK1 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19653
95 % 1 2 17397 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.2
PDBFlex
90 % 1 2 17048
70 % 1 2 15836
50 % 1 2 13852
40 % 1 2 12410
30 % 2 3 9160

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.