Sequence Similarity Clusters for the Entities in PDB 4GKP

Entity #1 | Chains: A,B
Spindle pole body-associated protein VIK1 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20123
95 % 1 2 17759 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.2
PDBFlex
90 % 1 2 17401
70 % 1 2 16167
50 % 1 2 14129
40 % 1 2 12650
30 % 2 3 9339

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures