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Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
4GKK
Sequence Clusters for the Sequence Entities in PDB 4GKK
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 252 29
95% 61 254 48
90% 61 254 51
70% 61 254 63
50% 91 369 34
40% 91 369 48
30% 91 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 255 27
95% 61 255 44
90% 61 255 47
70% 61 255 59
50% 85 363 42
40% 89 403 39
30% 89 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 224 37
95% 61 262 36
90% 61 262 38
70% 85 375 24
50% 85 375 33
40% 85 375 47
30% 85 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 256 24
95% 61 256 42
90% 61 256 45
70% 61 256 57
50% 85 365 39
40% 85 365 53
30% 87 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 254 28
95% 61 254 49
90% 61 254 52
70% 61 254 64
50% 61 254 99
40% 61 254 124
30% 61 254 144
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 258 21
95% 65 263 35
90% 65 263 37
70% 65 263 48
50% 92 376 32
40% 92 376 45
30% 92 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 250 31
95% 61 255 46
90% 61 255 49
70% 61 255 61
50% 61 255 97
40% 61 255 122
30% 85 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 92 219
95% 61 249 51
90% 61 253 53
70% 61 253 65
50% 61 253 100
40% 61 253 126
30% 61 253 146
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4832
95% 5 36 1041
90% 5 36 1064
70% 5 36 1093
50% 5 36 1157
40% 5 36 1190
30% 5 36 1178
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 35 742
95% 5 35 1070
90% 5 35 1092
70% 5 35 1130
50% 86 366 38
40% 86 366 52
30% 86 366 75
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 255 25
95% 61 256 39
90% 61 256 43
70% 61 256 55
50% 61 256 96
40% 85 363 55
30% 85 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 61 359
95% 61 254 47
90% 61 254 50
70% 61 254 62
50% 61 254 98
40% 61 254 123
30% 61 254 143
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 238 34
95% 61 238 55
90% 61 238 59
70% 61 238 71
50% 61 238 110
40% 61 238 133
30% 61 238 153
Entity #22: Chains: W - mRNA A-site fragment rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human mitochondrial Met rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 35 735
95% 5 35 1063
90% 5 35 1085
70% 5 35 1119
50% 19 79 449
40% 19 80 467
30% 19 80 487
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 248 32
95% 61 256 40
90% 61 256 44
70% 61 256 56
50% 85 363 40
40% 85 364 54
30% 85 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 255 26
95% 61 255 43
90% 61 255 46
70% 61 255 58
50% 86 367 37
40% 86 367 51
30% 86 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 260 18
95% 69 266 34
90% 69 266 36
70% 69 266 47
50% 69 266 88
40% 69 266 112
30% 85 313 95
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 259 20
95% 62 260 37
90% 62 260 39
70% 62 260 51
50% 77 308 57
40% 77 309 74
30% 77 309 97
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 255 23
95% 62 255 41
90% 62 259 40
70% 62 259 52
50% 88 369 36
40% 89 371 49
30% 92 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 113 134
95% 61 255 45
90% 61 255 48
70% 61 255 60
50% 85 363 41
40% 85 363 56
30% 87 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.