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An Information Portal to 110071 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
4GKK
Sequence Clusters for the Sequence Entities in PDB 4GKK
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 218 36
95% 70 219 50
90% 70 219 54
70% 70 219 65
50% 89 306 31
40% 89 306 42
30% 102 359 42
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 220 34
95% 70 220 46
90% 70 220 50
70% 70 220 60
50% 83 300 42
40% 98 360 31
30% 98 361 41
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 183 46
95% 70 227 27
90% 70 227 32
70% 83 311 21
50% 83 312 30
40% 83 312 41
30% 83 312 56
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 221 32
95% 70 221 44
90% 70 221 48
70% 70 221 58
50% 84 305 38
40% 84 305 50
30% 97 360 47
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 219 35
95% 70 219 51
90% 70 219 55
70% 70 220 63
50% 70 220 92
40% 70 220 113
30% 70 220 126
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 223 28
95% 74 228 25
90% 74 228 29
70% 74 228 41
50% 90 313 28
40% 90 314 39
30% 90 314 55
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 215 37
95% 70 220 48
90% 70 220 52
70% 70 220 62
50% 70 220 91
40% 70 221 112
30% 84 303 69
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 80 223
95% 70 214 56
90% 70 218 57
70% 70 218 67
50% 70 218 94
40% 70 218 116
30% 70 218 128
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 5263
95% 5 28 918
90% 5 28 940
70% 5 28 976
50% 5 28 1022
40% 5 28 1046
30% 5 28 1024
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 223 27
95% 71 223 40
90% 71 223 45
70% 71 223 55
50% 84 303 35
40% 84 303 47
30% 84 303 65
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 220 30
95% 70 221 41
90% 70 221 46
70% 70 221 56
50% 83 299 41
40% 83 300 51
30% 83 300 68
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 49 367
95% 70 219 49
90% 70 219 53
70% 70 219 64
50% 70 219 93
40% 70 219 114
30% 70 219 127
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 210 39
95% 70 210 59
90% 70 210 62
70% 70 210 72
50% 70 210 98
40% 70 210 120
30% 70 210 133
Entity #22: Chains: W - mRNA A-site fragment rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human mitochondrial Met rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 26 686
95% 5 26 955
90% 5 26 979
70% 5 26 1013
50% 15 62 399
40% 15 63 421
30% 15 63 430
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 213 38
95% 70 221 42
90% 70 221 47
70% 70 221 57
50% 83 300 39
40% 83 301 49
30% 83 301 67
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 220 33
95% 70 220 45
90% 70 220 49
70% 70 220 59
50% 84 304 34
40% 84 304 46
30% 84 306 64
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 225 24
95% 78 231 23
90% 78 231 28
70% 78 231 39
50% 78 231 82
40% 78 231 104
30% 90 270 77
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 224 26
95% 71 225 38
90% 71 225 42
70% 71 225 52
50% 83 268 50
40% 83 269 60
30% 83 269 80
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 220 31
95% 71 220 43
90% 71 224 43
70% 71 224 53
50% 86 306 33
40% 87 308 43
30% 101 364 40
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 90 166
95% 70 220 47
90% 70 220 51
70% 70 220 61
50% 83 300 43
40% 83 300 52
30% 96 355 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.