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An Information Portal to 108607 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
4GKK
Sequence Clusters for the Sequence Entities in PDB 4GKK
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 197 29
95% 60 198 46
90% 60 198 48
70% 60 198 61
50% 79 283 35
40% 79 283 45
30% 92 334 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 199 26
95% 60 199 40
90% 60 199 42
70% 60 199 54
50% 73 277 41
40% 88 335 35
30% 88 336 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 166 36
95% 60 206 32
90% 60 206 34
70% 73 288 24
50% 73 289 34
40% 73 289 44
30% 73 289 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 200 23
95% 60 200 38
90% 60 200 40
70% 60 200 51
50% 74 282 39
40% 74 282 50
30% 87 335 49
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 198 27
95% 60 198 47
90% 60 198 49
70% 60 199 57
50% 60 199 90
40% 60 199 113
30% 60 199 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 202 21
95% 64 207 31
90% 64 207 33
70% 64 207 43
50% 80 290 33
40% 80 291 43
30% 80 291 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 194 30
95% 60 199 42
90% 60 199 44
70% 60 199 56
50% 60 199 89
40% 60 200 112
30% 74 280 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 80 223
95% 60 193 50
90% 60 197 50
70% 60 197 62
50% 60 197 94
40% 60 197 117
30% 60 197 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 5185
95% 5 27 944
90% 5 27 968
70% 5 27 1003
50% 5 27 1043
40% 5 27 1068
30% 5 27 1043
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 202 20
95% 61 202 34
90% 61 202 37
70% 61 202 47
50% 74 280 38
40% 74 280 49
30% 74 280 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 199 24
95% 60 200 35
90% 60 200 38
70% 60 200 48
50% 73 276 43
40% 73 277 52
30% 73 277 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 49 360
95% 60 198 45
90% 60 198 47
70% 60 198 60
50% 60 198 93
40% 60 198 115
30% 60 198 138
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 189 32
95% 60 189 52
90% 60 189 55
70% 60 189 68
50% 60 189 112
40% 60 189 135
30% 60 189 153
Entity #22: Chains: W - mRNA A-site fragment rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human mitochondrial Met rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 25 717
95% 5 25 1001
90% 5 25 1020
70% 5 25 1045
50% 15 61 405
40% 15 62 426
30% 15 62 430
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 192 31
95% 60 200 36
90% 60 200 39
70% 60 200 49
50% 73 277 40
40% 73 278 51
30% 73 278 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 199 25
95% 60 199 39
90% 60 199 41
70% 60 199 52
50% 74 281 37
40% 74 281 48
30% 74 283 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 204 18
95% 68 210 30
90% 68 210 32
70% 68 210 42
50% 68 210 83
40% 68 210 107
30% 80 249 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 203 19
95% 61 204 33
90% 61 204 35
70% 61 204 44
50% 73 247 56
40% 73 248 71
30% 73 248 95
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 199 22
95% 61 199 37
90% 61 203 36
70% 61 203 45
50% 76 283 36
40% 77 285 46
30% 91 339 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 90 159
95% 60 199 41
90% 60 199 43
70% 60 199 55
50% 73 277 42
40% 73 277 54
30% 86 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.