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An Information Portal to 106858 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
4GKK
Sequence Clusters for the Sequence Entities in PDB 4GKK
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 194 28
95% 58 195 46
90% 58 195 48
70% 58 195 59
50% 76 276 35
40% 76 276 45
30% 89 326 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 196 26
95% 58 196 42
90% 58 196 44
70% 58 196 55
50% 70 270 42
40% 85 325 36
30% 85 325 47
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 165 35
95% 58 203 31
90% 58 203 33
70% 70 282 24
50% 70 282 34
40% 70 282 44
30% 70 282 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 197 23
95% 58 197 38
90% 58 197 40
70% 58 197 52
50% 71 275 39
40% 71 275 51
30% 84 326 49
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 195 27
95% 58 195 47
90% 58 195 49
70% 58 195 60
50% 58 195 92
40% 58 195 116
30% 58 195 139
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 199 19
95% 62 204 30
90% 62 204 32
70% 62 204 44
50% 77 283 33
40% 77 283 43
30% 77 283 68
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 191 29
95% 58 196 44
90% 58 196 46
70% 58 196 57
50% 58 196 89
40% 58 196 114
30% 71 273 77
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 80 221
95% 58 190 49
90% 58 194 50
70% 58 194 61
50% 58 194 93
40% 58 194 117
30% 58 194 141
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 5088
95% 5 26 961
90% 5 26 979
70% 5 26 1008
50% 5 26 1048
40% 5 26 1072
30% 5 26 1051
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 25 707
95% 5 25 984
90% 5 25 1002
70% 5 25 1028
50% 71 273 38
40% 71 273 49
30% 71 273 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 196 24
95% 58 197 35
90% 58 197 38
70% 58 197 50
50% 58 197 88
40% 70 270 53
30% 70 270 76
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 49 354
95% 58 195 45
90% 58 195 47
70% 58 195 58
50% 58 195 91
40% 58 195 115
30% 58 195 138
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 186 32
95% 58 186 51
90% 58 186 54
70% 58 186 66
50% 58 186 110
40% 58 186 133
30% 58 186 151
Entity #22: Chains: W - mRNA A-site fragment rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human mitochondrial Met rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 24 739
95% 5 24 1030
90% 5 24 1046
70% 5 24 1068
50% 14 58 417
40% 14 59 434
30% 14 59 447
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 189 30
95% 58 197 36
90% 58 197 39
70% 58 197 51
50% 70 270 40
40% 70 271 52
30% 70 271 75
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 196 25
95% 58 196 40
90% 58 196 42
70% 58 196 54
50% 71 274 37
40% 71 274 48
30% 71 276 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 201 17
95% 66 207 29
90% 66 207 31
70% 66 207 42
50% 66 207 81
40% 66 207 108
30% 77 244 90
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 200 18
95% 59 201 33
90% 59 201 35
70% 59 201 46
50% 70 242 55
40% 70 243 71
30% 70 243 95
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 196 22
95% 59 196 37
90% 59 200 36
70% 59 200 47
50% 73 276 36
40% 74 278 46
30% 88 330 45
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 90 140
95% 58 196 43
90% 58 196 45
70% 58 196 56
50% 70 270 41
40% 70 270 54
30% 83 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.