4GKK

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin


Sequence Similarity Clusters for the Entities in PDB 4GKK

Entity #1 | Chains: A
16S rRNA rna, length: 1513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 267 37
95 % 93 268 50
90 % 93 268 53
70 % 93 268 64
50 % 120 385 26
40 % 120 385 37
30 % 133 476 29
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 269 35
95 % 93 269 46
90 % 93 269 49
70 % 93 269 58
50 % 114 379 35
40 % 129 470 19
30 % 129 471 32
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 217 47
95 % 93 276 35
90 % 93 276 39
70 % 114 390 21
50 % 114 391 25
40 % 114 391 36
30 % 114 391 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 270 33
95 % 93 270 43
90 % 93 270 47
70 % 93 270 56
50 % 115 384 31
40 % 115 384 43
30 % 128 477 35
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 268 36
95 % 93 268 51
90 % 93 268 54
70 % 93 269 61
50 % 93 269 87
40 % 93 269 107
30 % 93 269 117
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 272 28
95 % 97 277 34
90 % 97 277 38
70 % 97 277 49
50 % 121 392 23
40 % 121 393 35
30 % 121 393 53
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 264 38
95 % 93 269 48
90 % 93 269 51
70 % 93 269 60
50 % 93 269 86
40 % 93 270 106
30 % 115 382 62
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 87 232
95 % 93 263 52
90 % 93 267 55
70 % 93 267 65
50 % 93 267 90
40 % 93 267 109
30 % 93 267 119
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 5300
95 % 9 37 778
90 % 9 37 810
70 % 9 37 857
50 % 9 37 903
40 % 9 37 925
30 % 9 37 917
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 272 27
95 % 94 272 39
90 % 94 272 44
70 % 94 272 53
50 % 115 382 30
40 % 115 382 41
30 % 115 382 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 269 31
95 % 93 270 40
90 % 93 270 45
70 % 93 270 54
50 % 114 378 34
40 % 114 379 44
30 % 114 379 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 51 436
95 % 93 268 49
90 % 93 268 52
70 % 93 268 63
50 % 93 268 89
40 % 93 268 108
30 % 93 268 118
Entity #21 | Chains: V
30S ribosomal protein Thx protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 259 41
95 % 93 259 54
90 % 93 259 58
70 % 93 259 68
50 % 93 259 93
40 % 93 259 115
30 % 93 259 128
Entity #22 | Chains: W
mRNA A-site fragment rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: X
tRNA ASL human mitochondrial Met rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 36 589
95 % 9 36 807
90 % 9 36 843
70 % 9 36 884
50 % 26 85 334
40 % 26 86 358
30 % 26 86 364
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 262 39
95 % 93 270 41
90 % 93 270 46
70 % 93 270 55
50 % 114 379 32
40 % 114 380 42
30 % 114 380 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 269 34
95 % 93 269 45
90 % 93 269 48
70 % 93 269 57
50 % 115 383 29
40 % 115 383 40
30 % 115 385 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 274 24
95 % 101 280 32
90 % 101 280 37
70 % 101 280 48
50 % 101 280 83
40 % 101 280 102
30 % 120 332 78
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 273 26
95 % 94 274 36
90 % 94 274 40
70 % 94 274 50
50 % 113 332 59
40 % 113 333 72
30 % 113 333 88
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 269 32
95 % 94 269 42
90 % 94 273 41
70 % 94 273 51
50 % 117 385 28
40 % 118 387 38
30 % 132 483 28
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 91 200
95 % 93 269 47
90 % 93 269 50
70 % 93 269 59
50 % 114 379 36
40 % 114 379 45
30 % 127 473 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.