4GKK

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin


Sequence Similarity Clusters for the Entities in PDB 4GKK

Entity #1 | Chains: A
16S rRNA rna, length: 1513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 253 36
95 % 92 254 49
90 % 92 254 54
70 % 92 254 64
50 % 119 361 28
40 % 119 361 38
30 % 132 434 36
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 255 34
95 % 92 255 45
90 % 92 255 50
70 % 92 255 59
50 % 113 355 35
40 % 128 436 20
30 % 128 437 34
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 207 47
95 % 92 262 36
90 % 92 262 41
70 % 113 366 21
50 % 113 367 27
40 % 113 367 37
30 % 113 367 57
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 256 32
95 % 92 256 43
90 % 92 256 48
70 % 92 256 57
50 % 114 360 32
40 % 114 360 44
30 % 127 435 39
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 254 35
95 % 92 254 50
90 % 92 254 55
70 % 92 255 62
50 % 92 255 87
40 % 92 255 108
30 % 92 255 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 258 29
95 % 96 263 35
90 % 96 263 40
70 % 96 263 50
50 % 120 368 26
40 % 120 369 36
30 % 120 369 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 250 37
95 % 92 255 47
90 % 92 255 52
70 % 92 255 61
50 % 92 255 86
40 % 92 256 107
30 % 114 358 62
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 87 224
95 % 92 249 52
90 % 92 253 56
70 % 92 253 65
50 % 92 253 89
40 % 92 253 111
30 % 92 253 124
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 5100
95 % 9 37 723
90 % 9 37 765
70 % 9 37 810
50 % 9 37 854
40 % 9 37 887
30 % 9 37 879
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 258 28
95 % 93 258 38
90 % 93 258 44
70 % 93 258 53
50 % 114 358 31
40 % 114 358 41
30 % 114 358 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 255 30
95 % 92 256 40
90 % 92 256 46
70 % 92 256 55
50 % 113 354 34
40 % 113 355 45
30 % 113 355 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 51 375
95 % 92 254 48
90 % 92 254 53
70 % 92 254 63
50 % 92 254 88
40 % 92 254 109
30 % 92 254 121
Entity #21 | Chains: V
30S ribosomal protein Thx protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 245 39
95 % 92 245 55
90 % 92 245 60
70 % 92 245 70
50 % 92 245 94
40 % 92 245 118
30 % 92 245 131
Entity #22 | Chains: W
mRNA A-site fragment rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: X
tRNA ASL human mitochondrial Met rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 36 539
95 % 9 36 757
90 % 9 36 797
70 % 9 36 840
50 % 26 79 339
40 % 26 80 366
30 % 26 80 376
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 248 38
95 % 92 256 41
90 % 92 256 47
70 % 92 256 56
50 % 113 355 33
40 % 113 356 43
30 % 113 356 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 255 33
95 % 92 255 44
90 % 92 255 49
70 % 92 255 58
50 % 114 359 30
40 % 114 359 40
30 % 114 361 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 260 25
95 % 100 266 34
90 % 100 266 37
70 % 100 266 46
50 % 100 266 84
40 % 100 266 103
30 % 119 312 79
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 259 27
95 % 93 260 37
90 % 93 260 42
70 % 93 260 51
50 % 112 312 54
40 % 112 313 68
30 % 112 313 88
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 255 31
95 % 93 255 42
90 % 93 259 43
70 % 93 259 52
50 % 116 361 29
40 % 117 363 39
30 % 131 440 33
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 91 198
95 % 92 255 46
90 % 92 255 51
70 % 92 255 60
50 % 113 355 36
40 % 113 355 46
30 % 126 431 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.