POP-OUT | CLOSE

An Information Portal to 107620 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
Sequence Clustering and Redundancy Reduction Results
4GKJ
Sequence Clusters for the Sequence Entities in PDB 4GKJ
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 196 28
95% 63 197 44
90% 63 197 46
70% 63 197 58
50% 83 280 35
40% 83 280 45
30% 96 331 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 198 24
95% 63 198 40
90% 63 198 42
70% 63 198 54
50% 77 274 42
40% 92 330 35
30% 92 330 47
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 165 35
95% 63 205 31
90% 63 205 33
70% 77 286 24
50% 77 286 34
40% 77 286 44
30% 77 286 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 199 21
95% 63 199 37
90% 63 199 39
70% 63 199 51
50% 79 279 39
40% 79 279 51
30% 92 331 49
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 197 25
95% 63 197 45
90% 63 197 47
70% 63 197 59
50% 63 197 92
40% 63 197 114
30% 63 197 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 201 19
95% 67 206 30
90% 67 206 32
70% 67 206 43
50% 84 287 33
40% 84 287 43
30% 84 287 68
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 193 29
95% 63 198 42
90% 63 198 44
70% 63 198 56
50% 63 198 90
40% 63 198 112
30% 79 277 75
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 80 222
95% 63 192 49
90% 63 196 48
70% 63 196 60
50% 63 196 93
40% 63 196 116
30% 63 196 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 5141
95% 6 26 970
90% 6 26 988
70% 6 26 1016
50% 6 26 1051
40% 6 26 1081
30% 6 26 1060
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 25 712
95% 6 25 993
90% 6 25 1011
70% 6 25 1037
50% 78 277 38
40% 78 277 48
30% 78 277 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 198 22
95% 63 199 34
90% 63 199 37
70% 63 199 48
50% 63 199 88
40% 77 274 53
30% 77 274 74
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 355
95% 63 197 43
90% 63 197 45
70% 63 197 57
50% 63 197 91
40% 63 197 113
30% 63 197 136
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 188 31
95% 63 188 51
90% 63 188 54
70% 63 188 66
50% 63 188 111
40% 63 188 133
30% 63 188 153
Entity #22: Chains: W - mRNA A-site fragment rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human mitochondrial Met rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 24 744
95% 6 24 1036
90% 6 24 1052
70% 6 24 1074
50% 17 59 406
40% 17 60 428
30% 17 60 438
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 191 30
95% 63 199 35
90% 63 199 38
70% 63 199 49
50% 77 274 40
40% 77 275 52
30% 77 275 73
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 198 23
95% 63 198 39
90% 63 198 41
70% 63 198 53
50% 78 278 37
40% 78 278 47
30% 78 280 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 203 17
95% 71 209 29
90% 71 209 31
70% 71 209 42
50% 71 209 80
40% 71 209 106
30% 84 247 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 202 18
95% 64 203 32
90% 64 203 34
70% 64 203 45
50% 78 245 53
40% 78 246 70
30% 78 246 94
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 198 20
95% 64 198 36
90% 64 202 35
70% 64 202 46
50% 80 280 36
40% 81 282 46
30% 95 335 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 90 156
95% 63 198 41
90% 63 198 43
70% 63 198 55
50% 77 274 41
40% 77 274 54
30% 90 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.