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An Information Portal to 110790 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
Sequence Clustering and Redundancy Reduction Results
4GKJ
Sequence Clusters for the Sequence Entities in PDB 4GKJ
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 218 36
95% 73 219 51
90% 73 219 55
70% 73 219 67
50% 93 306 33
40% 93 306 43
30% 106 360 42
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 220 34
95% 73 220 47
90% 73 220 51
70% 73 220 62
50% 87 300 42
40% 102 361 30
30% 102 362 41
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 183 46
95% 73 227 38
90% 73 227 42
70% 87 311 23
50% 87 312 32
40% 87 312 42
30% 87 312 57
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 221 32
95% 73 221 45
90% 73 221 49
70% 73 221 60
50% 89 305 38
40% 89 305 50
30% 102 361 47
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 219 35
95% 73 219 52
90% 73 219 56
70% 73 220 65
50% 73 220 92
40% 73 220 113
30% 73 220 126
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 223 29
95% 77 228 26
90% 77 228 31
70% 77 228 43
50% 94 313 29
40% 94 314 40
30% 94 314 55
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 215 37
95% 73 220 49
90% 73 220 53
70% 73 220 64
50% 73 220 91
40% 73 221 112
30% 89 303 70
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 80 224
95% 73 214 56
90% 73 218 58
70% 73 218 69
50% 73 218 94
40% 73 218 116
30% 73 218 128
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 5313
95% 6 28 925
90% 6 28 948
70% 6 28 981
50% 6 28 1026
40% 6 28 1052
30% 6 28 1031
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 223 27
95% 74 223 41
90% 74 223 46
70% 74 223 57
50% 88 303 37
40% 88 303 48
30% 88 303 67
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 220 30
95% 73 221 42
90% 73 221 47
70% 73 221 58
50% 87 299 41
40% 87 300 51
30% 87 300 69
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 367
95% 73 219 50
90% 73 219 54
70% 73 219 66
50% 73 219 93
40% 73 219 114
30% 73 219 127
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 210 40
95% 73 210 59
90% 73 210 62
70% 73 210 73
50% 73 210 98
40% 73 210 120
30% 73 210 133
Entity #22: Chains: W - mRNA A-site fragment rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human mitochondrial Met rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 26 694
95% 6 26 964
90% 6 26 989
70% 6 26 1020
50% 17 62 402
40% 17 63 424
30% 17 63 433
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 213 38
95% 73 221 43
90% 73 221 48
70% 73 221 59
50% 87 300 39
40% 87 301 49
30% 87 301 68
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 220 33
95% 73 220 46
90% 73 220 50
70% 73 220 61
50% 88 304 36
40% 88 304 47
30% 88 306 65
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 225 24
95% 81 231 24
90% 81 231 29
70% 81 231 41
50% 81 231 83
40% 81 231 105
30% 94 270 79
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 224 26
95% 74 225 40
90% 74 225 44
70% 74 225 55
50% 88 268 51
40% 88 269 62
30% 88 269 81
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 220 31
95% 74 220 44
90% 74 224 45
70% 74 224 56
50% 90 306 34
40% 91 308 44
30% 105 365 40
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 90 167
95% 73 220 48
90% 73 220 52
70% 73 220 63
50% 87 300 43
40% 87 300 52
30% 100 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.