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An Information Portal to 108395 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
Sequence Clustering and Redundancy Reduction Results
4GKJ
Sequence Clusters for the Sequence Entities in PDB 4GKJ
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 197 29
95% 63 198 45
90% 63 198 47
70% 63 198 60
50% 83 283 35
40% 83 283 45
30% 96 334 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 199 26
95% 63 199 40
90% 63 199 42
70% 63 199 54
50% 77 277 41
40% 92 335 35
30% 92 336 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 166 36
95% 63 206 31
90% 63 206 33
70% 77 288 24
50% 77 289 34
40% 77 289 44
30% 77 289 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 200 23
95% 63 200 38
90% 63 200 40
70% 63 200 51
50% 79 282 39
40% 79 282 50
30% 92 335 49
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 198 27
95% 63 198 46
90% 63 198 48
70% 63 199 57
50% 63 199 90
40% 63 199 113
30% 63 199 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 202 21
95% 67 207 30
90% 67 207 32
70% 67 207 43
50% 84 290 33
40% 84 291 43
30% 84 291 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 194 30
95% 63 199 42
90% 63 199 44
70% 63 199 56
50% 63 199 89
40% 63 200 112
30% 79 280 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 80 222
95% 63 193 50
90% 63 197 49
70% 63 197 61
50% 63 197 93
40% 63 197 116
30% 63 197 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 5177
95% 6 27 942
90% 6 27 966
70% 6 27 1000
50% 6 27 1041
40% 6 27 1067
30% 6 27 1042
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 202 20
95% 64 202 33
90% 64 202 36
70% 64 202 47
50% 78 280 38
40% 78 280 49
30% 78 280 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 199 24
95% 63 200 35
90% 63 200 38
70% 63 200 48
50% 77 276 43
40% 77 277 52
30% 77 277 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 358
95% 63 198 44
90% 63 198 46
70% 63 198 59
50% 63 198 92
40% 63 198 114
30% 63 198 138
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 189 32
95% 63 189 52
90% 63 189 55
70% 63 189 67
50% 63 189 112
40% 63 189 135
30% 63 189 153
Entity #22: Chains: W - mRNA A-site fragment rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human mitochondrial Met rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 25 714
95% 6 25 998
90% 6 25 1017
70% 6 25 1042
50% 17 61 403
40% 17 62 424
30% 17 62 429
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 192 31
95% 63 200 36
90% 63 200 39
70% 63 200 49
50% 77 277 40
40% 77 278 51
30% 77 278 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 199 25
95% 63 199 39
90% 63 199 41
70% 63 199 52
50% 78 281 37
40% 78 281 48
30% 78 283 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 204 18
95% 71 210 29
90% 71 210 31
70% 71 210 42
50% 71 210 83
40% 71 210 107
30% 84 249 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 203 19
95% 64 204 32
90% 64 204 34
70% 64 204 44
50% 78 247 55
40% 78 248 70
30% 78 248 94
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 199 22
95% 64 199 37
90% 64 203 35
70% 64 203 45
50% 80 283 36
40% 81 285 46
30% 95 339 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 90 159
95% 63 199 41
90% 63 199 43
70% 63 199 55
50% 77 277 42
40% 77 277 54
30% 90 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.