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An Information Portal to 111558 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
Sequence Clustering and Redundancy Reduction Results
4GKJ
Sequence Clusters for the Sequence Entities in PDB 4GKJ
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 217 36
95% 73 218 51
90% 73 218 55
70% 73 218 67
50% 94 306 31
40% 94 306 42
30% 107 368 40
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 219 34
95% 73 219 47
90% 73 219 51
70% 73 219 62
50% 88 300 42
40% 103 369 30
30% 103 370 38
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 182 46
95% 73 226 39
90% 73 226 43
70% 88 311 22
50% 88 312 30
40% 88 312 41
30% 88 312 57
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 220 32
95% 73 220 45
90% 73 220 49
70% 73 220 60
50% 90 305 39
40% 90 305 50
30% 103 369 44
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 218 35
95% 73 218 52
90% 73 218 56
70% 73 219 65
50% 73 219 92
40% 73 219 114
30% 73 219 128
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 222 29
95% 77 227 36
90% 77 227 40
70% 77 227 52
50% 95 313 29
40% 95 314 39
30% 95 314 54
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 214 37
95% 73 219 49
90% 73 219 53
70% 73 219 64
50% 73 219 91
40% 73 220 113
30% 90 303 70
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 80 226
95% 73 213 56
90% 73 217 58
70% 73 217 69
50% 73 217 94
40% 73 217 116
30% 73 217 130
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 5363
95% 6 27 931
90% 6 27 956
70% 6 27 991
50% 6 27 1036
40% 6 27 1061
30% 6 27 1035
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 222 28
95% 74 222 41
90% 74 222 46
70% 74 222 57
50% 89 303 38
40% 89 303 48
30% 89 303 67
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 219 30
95% 73 220 42
90% 73 220 47
70% 73 220 58
50% 88 299 41
40% 88 300 51
30% 88 300 69
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 371
95% 73 218 50
90% 73 218 54
70% 73 218 66
50% 73 218 93
40% 73 218 115
30% 73 218 129
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 209 40
95% 73 209 59
90% 73 209 62
70% 73 209 73
50% 73 209 100
40% 73 209 123
30% 73 209 135
Entity #22: Chains: W - mRNA A-site fragment rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human mitochondrial Met rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 26 700
95% 6 26 971
90% 6 26 996
70% 6 26 1031
50% 17 62 404
40% 17 63 426
30% 17 63 438
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 212 38
95% 73 220 43
90% 73 220 48
70% 73 220 59
50% 88 300 40
40% 88 301 49
30% 88 301 68
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 219 33
95% 73 219 46
90% 73 219 50
70% 73 219 61
50% 89 304 37
40% 89 304 47
30% 89 306 63
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 224 25
95% 81 230 24
90% 81 230 29
70% 81 230 41
50% 81 230 83
40% 81 230 108
30% 94 269 80
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 223 27
95% 74 224 40
90% 74 224 44
70% 74 224 55
50% 88 267 51
40% 88 268 64
30% 88 268 83
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 219 31
95% 74 219 44
90% 74 223 45
70% 74 223 56
50% 91 306 35
40% 92 308 43
30% 106 373 37
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 89 180
95% 73 219 48
90% 73 219 52
70% 73 219 63
50% 88 300 43
40% 88 300 52
30% 101 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.