4GKJ

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.


Sequence Similarity Clusters for the Entities in PDB 4GKJ

Entity #1 | Chains: A
16S rRNA rna, length: 1513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 252 35
95 % 96 253 48
90 % 96 253 53
70 % 96 253 63
50 % 117 348 28
40 % 117 348 38
30 % 130 420 36
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 254 33
95 % 96 254 44
90 % 96 254 49
70 % 96 254 58
50 % 111 342 36
40 % 126 421 22
30 % 126 422 35
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 206 45
95 % 96 261 35
90 % 96 261 39
70 % 111 353 23
50 % 111 354 27
40 % 111 354 37
30 % 111 354 56
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 255 30
95 % 96 255 41
90 % 96 255 46
70 % 96 255 55
50 % 113 347 33
40 % 113 347 45
30 % 126 421 41
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 253 34
95 % 96 253 49
90 % 96 253 54
70 % 96 254 61
50 % 96 254 86
40 % 96 254 107
30 % 96 254 119
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 257 27
95 % 100 262 34
90 % 100 262 38
70 % 100 262 49
50 % 118 355 26
40 % 118 356 36
30 % 118 356 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 249 36
95 % 96 254 46
90 % 96 254 51
70 % 96 254 60
50 % 96 254 85
40 % 96 255 106
30 % 113 345 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 87 223
95 % 96 248 50
90 % 96 252 55
70 % 96 252 64
50 % 96 252 88
40 % 96 252 109
30 % 96 252 122
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 7 5015
95 % 11 37 710
90 % 11 37 752
70 % 11 37 795
50 % 11 37 842
40 % 11 37 876
30 % 11 37 866
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 257 26
95 % 97 257 37
90 % 97 257 43
70 % 97 257 52
50 % 112 345 31
40 % 112 345 42
30 % 112 345 60
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 254 28
95 % 96 255 38
90 % 96 255 44
70 % 96 255 53
50 % 111 341 35
40 % 111 342 47
30 % 111 342 62
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 51 370
95 % 96 253 47
90 % 96 253 52
70 % 96 253 62
50 % 96 253 87
40 % 96 253 108
30 % 96 253 121
Entity #21 | Chains: V
30S ribosomal protein Thx protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 244 38
95 % 96 244 54
90 % 96 244 57
70 % 96 244 68
50 % 96 244 92
40 % 96 244 115
30 % 96 244 129
Entity #22 | Chains: W
mRNA A-site fragment rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: X
tRNA ASL human mitochondrial Met rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 36 523
95 % 11 36 744
90 % 11 36 785
70 % 11 36 829
50 % 22 72 381
40 % 22 73 400
30 % 22 73 410
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 247 37
95 % 96 255 39
90 % 96 255 45
70 % 96 255 54
50 % 111 342 34
40 % 111 343 44
30 % 111 343 61
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 254 32
95 % 96 254 43
90 % 96 254 48
70 % 96 254 57
50 % 112 346 30
40 % 112 346 41
30 % 112 348 57
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 259 24
95 % 104 265 33
90 % 104 265 36
70 % 104 265 44
50 % 104 265 82
40 % 104 265 101
30 % 117 304 78
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 258 25
95 % 97 259 36
90 % 97 259 41
70 % 97 259 50
50 % 111 304 51
40 % 111 305 64
30 % 111 305 87
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 254 29
95 % 97 254 40
90 % 97 258 42
70 % 97 258 51
50 % 114 348 29
40 % 115 350 39
30 % 129 425 33
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 91 192
95 % 96 254 45
90 % 96 254 50
70 % 96 254 59
50 % 111 342 37
40 % 111 342 48
30 % 124 416 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.