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Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
Sequence Clustering and Redundancy Reduction Results
4GKJ
Sequence Clusters for the Sequence Entities in PDB 4GKJ
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 265 27
95% 73 267 47
90% 73 267 49
70% 73 267 59
50% 107 382 34
40% 107 382 45
30% 107 387 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 268 25
95% 73 268 43
90% 73 268 45
70% 73 268 55
50% 101 376 41
40% 119 436 38
30% 119 436 51
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 237 35
95% 73 275 35
90% 73 275 37
70% 101 388 24
50% 101 388 33
40% 101 388 44
30% 101 388 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 269 22
95% 73 269 41
90% 73 269 43
70% 73 269 53
50% 101 378 38
40% 101 378 51
30% 117 434 54
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 267 26
95% 73 267 48
90% 73 267 50
70% 73 267 60
50% 73 267 93
40% 73 267 119
30% 73 267 140
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 271 20
95% 77 276 32
90% 77 276 34
70% 77 276 47
50% 108 389 32
40% 108 389 43
30% 108 389 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 263 28
95% 73 268 45
90% 73 268 47
70% 73 268 57
50% 73 268 91
40% 73 268 117
30% 101 376 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 92 220
95% 73 262 49
90% 73 266 51
70% 73 266 61
50% 73 266 94
40% 73 266 120
30% 73 266 142
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 10 4899
95% 6 38 1012
90% 6 38 1035
70% 6 38 1078
50% 6 38 1154
40% 6 38 1174
30% 6 38 1150
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 37 734
95% 6 37 1040
90% 6 37 1061
70% 6 37 1109
50% 102 379 37
40% 102 379 49
30% 102 379 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 268 23
95% 73 269 38
90% 73 269 41
70% 73 269 51
50% 73 269 90
40% 101 376 53
30% 101 376 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 61 362
95% 73 267 46
90% 73 267 48
70% 73 267 58
50% 73 267 92
40% 73 267 118
30% 73 267 139
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 249 33
95% 73 249 52
90% 73 249 55
70% 73 249 66
50% 73 249 103
40% 73 249 130
30% 73 249 150
Entity #22: Chains: W - mRNA A-site fragment rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human mitochondrial Met rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 37 728
95% 6 37 1031
90% 6 37 1052
70% 6 37 1095
50% 22 81 438
40% 22 82 457
30% 22 82 475
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 261 29
95% 73 269 39
90% 73 269 42
70% 73 269 52
50% 101 376 39
40% 101 377 52
30% 101 377 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 268 24
95% 73 268 42
90% 73 268 44
70% 73 268 54
50% 102 380 36
40% 102 380 48
30% 102 382 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 273 18
95% 81 279 29
90% 81 279 30
70% 81 279 44
50% 81 279 82
40% 81 279 106
30% 99 326 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 272 19
95% 74 273 36
90% 74 273 38
70% 74 273 49
50% 91 321 56
40% 91 322 73
30% 91 322 96
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 268 21
95% 74 268 40
90% 74 272 39
70% 74 272 50
50% 104 382 35
40% 105 384 46
30% 122 441 47
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 113 138
95% 73 268 44
90% 73 268 46
70% 73 268 56
50% 101 376 40
40% 101 376 54
30% 117 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.