Sequence Similarity Clusters for the Entities in PDB 4GJT

Entity #1 | Chains: A
Hemagglutinin glycoprotein protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54369
95 % 5 6 11789 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 5 6 11595
70 % 5 6 10953
50 % 5 6 9823
40 % 5 6 8863
30 % 5 6 7667
Entity #2 | Chains: B,C
Poliovirus receptor-related protein 4 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36033
95 % 1 1 30931 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 29638
70 % 1 1 26564
50 % 1 1 22754
40 % 1 1 20064
30 % 46 48 791

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures