Sequence Similarity Clusters for the Entities in PDB 4GJT

Entity #1 | Chains: A
Hemagglutinin glycoprotein protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52982
95 % 5 6 10321 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 5 6 10196
70 % 5 6 9681
50 % 5 6 8770
40 % 5 6 8039
30 % 5 6 7100
Entity #2 | Chains: B,C
Poliovirus receptor-related protein 4 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46724
95 % 1 1 34942 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 33367
70 % 1 1 29687
50 % 1 1 25333
40 % 1 1 22291
30 % 15 16 1677

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures