Sequence Similarity Clusters for the Entities in PDB 4GJT

Entity #1 | Chains: A
Hemagglutinin glycoprotein protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50799
95 % 5 6 10919 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 5 6 10757
70 % 5 6 10166
50 % 5 6 9157
40 % 5 6 8293
30 % 5 6 7181
Entity #2 | Chains: B,C
Poliovirus receptor-related protein 4 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33444
95 % 1 1 28774 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 27640
70 % 1 1 24919
50 % 1 1 21363
40 % 1 1 18856
30 % 38 40 879

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures