Sequence Similarity Clusters for the Entities in PDB 4GJT

Entity #1 | Chains: A
Hemagglutinin glycoprotein protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52904
95 % 5 6 11422 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 5 6 11252
70 % 5 6 10648
50 % 5 6 9560
40 % 5 6 8628
30 % 5 6 7463
Entity #2 | Chains: B,C
Poliovirus receptor-related protein 4 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34981
95 % 1 1 30080 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 28848
70 % 1 1 25912
50 % 1 1 22203
40 % 1 1 19583
30 % 38 40 921

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures