Sequence Similarity Clusters for the Entities in PDB 4GJT

Entity #1 | Chains: A
Hemagglutinin glycoprotein protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51994
95 % 5 6 10142 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 5 6 10019
70 % 5 6 9515
50 % 5 6 8618
40 % 5 6 7900
30 % 5 6 6983
Entity #2 | Chains: B,C
Poliovirus receptor-related protein 4 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45822
95 % 1 1 34314 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 32799
70 % 1 1 29217
50 % 1 1 24946
40 % 1 1 21954
30 % 15 16 1632

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.