Sequence Similarity Clusters for the Entities in PDB 4GIZ

Entity #1 | Chains: A,B
Maltose-binding periplasmic protein, UBIQUITIN LIGASE EA6P: chimeric protein protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 8500
95 % 76 115 214 Flexibility: Low
Max RMSD: 8.8, Avg RMSD: 2.1
PDBFlex
90 % 83 135 153
70 % 111 184 100
50 % 111 184 138
40 % 111 184 150
30 % 125 201 145
Entity #2 | Chains: C,D
Protein E6 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46089
95 % 2 2 20196 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.2
PDBFlex
90 % 2 2 19640
70 % 2 2 18117
50 % 2 2 15712
40 % 2 2 13966
30 % 2 2 11945

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures