Sequence Similarity Clusters for the Entities in PDB 4GIZ

Entity #1 | Chains: A,B
Maltose-binding periplasmic protein, UBIQUITIN LIGASE EA6P: chimeric protein protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 8288
95 % 76 115 213 Flexibility: Low
Max RMSD: 8.8, Avg RMSD: 2.1
PDBFlex
90 % 83 135 151
70 % 110 183 95
50 % 110 183 133
40 % 110 183 149
30 % 124 200 144
Entity #2 | Chains: C,D
Protein E6 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45220
95 % 2 2 19784 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.2
PDBFlex
90 % 2 2 19255
70 % 2 2 17778
50 % 2 2 15438
40 % 2 2 13734
30 % 2 2 11760

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures