Sequence Similarity Clusters for the Entities in PDB 4GHA

Entity #1 | Chains: A,C,E,G
Polymerase cofactor VP35 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15561
95 % 2 2 14587 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 2 2 14315
70 % 2 2 13449
50 % 2 3 6983
40 % 2 3 6488
30 % 2 3 5788
Entity #2 | Chains: I,J
RNA (5'-R(*CP*UP*AP*GP*AP*CP*GP*UP*CP*UP*AP*G)-3') rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.