Sequence Similarity Clusters for the Entities in PDB 4GHA

Entity #1 | Chains: A,C,E,G
Polymerase cofactor VP35 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16955
95 % 2 2 15243 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 2 2 14937
70 % 2 2 13980
50 % 4 5 4336
40 % 4 5 4098
30 % 4 5 3768
Entity #2 | Chains: I,J
RNA (5'-R(*CP*UP*AP*GP*AP*CP*GP*UP*CP*UP*AP*G)-3') rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures