Sequence Similarity Clusters for the Entities in PDB 4GEQ

Entity #1 | Chains: A,C
Kinetochore protein SPC25 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15980
95 % 3 4 14980 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 4 14702
70 % 3 4 13765
50 % 3 4 12219
40 % 3 4 11077
30 % 3 4 9620
Entity #2 | Chains: B,D
Kinetochore protein SPC24 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48465
95 % 1 1 36205
90 % 1 1 34591
70 % 1 1 30768
50 % 1 1 26313
40 % 1 1 23224
30 % 1 1 19707
Entity #3 | Chains: E,F
Kinetochore-associated protein CNN1 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49447
95 % 1 1 37011
90 % 1 1 35353
70 % 1 1 31472
50 % 1 1 26950
40 % 1 1 23847
30 % 1 1 20319

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.