Sequence Similarity Clusters for the Entities in PDB 4GEQ

Entity #1 | Chains: A,C
Kinetochore protein SPC25 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 16546
95 % 3 4 15392 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 4 15085
70 % 3 4 14131
50 % 3 4 12483
40 % 3 4 11215
30 % 3 4 9535
Entity #2 | Chains: B,D
Kinetochore protein SPC24 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44332
95 % 1 1 36973
90 % 1 1 35305
70 % 1 1 31382
50 % 1 1 26728
40 % 1 1 23439
30 % 1 1 19539
Entity #3 | Chains: E,F
Kinetochore-associated protein CNN1 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44333
95 % 1 1 36974
90 % 1 1 35306
70 % 1 1 31383
50 % 1 1 26729
40 % 1 1 23440
30 % 1 1 19540

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures