Sequence Similarity Clusters for the Entities in PDB 4GEQ

Entity #1 | Chains: A,C
Kinetochore protein SPC25 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 16631
95 % 3 4 15508 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 4 15222
70 % 3 4 14249
50 % 3 4 12628
40 % 3 4 11434
30 % 3 4 9932
Entity #2 | Chains: B,D
Kinetochore protein SPC24 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50081
95 % 1 1 37360
90 % 1 1 35645
70 % 1 1 31661
50 % 1 1 27037
40 % 1 1 23863
30 % 1 1 20237
Entity #3 | Chains: E,F
Kinetochore-associated protein CNN1 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51073
95 % 1 1 38179
90 % 1 1 36420
70 % 1 1 32374
50 % 1 1 27682
40 % 1 1 24492
30 % 1 1 20855

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures