Sequence Similarity Clusters for the Entities in PDB 4GEQ

Entity #1 | Chains: A,C
Kinetochore protein SPC25 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 17163
95 % 3 4 15917 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 4 15579
70 % 3 4 14565
50 % 3 4 12846
40 % 3 4 11526
30 % 3 4 9787
Entity #2 | Chains: B,D
Kinetochore protein SPC24 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45728
95 % 1 1 38097 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 36328
70 % 1 1 32220
50 % 1 1 27395
40 % 1 1 24018
30 % 1 1 20007
Entity #3 | Chains: E,F
Kinetochore-associated protein CNN1 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45729
95 % 1 1 38098
90 % 1 1 36329
70 % 1 1 32221
50 % 1 1 27396
40 % 1 1 24019
30 % 1 1 20008

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures