Sequence Similarity Clusters for the Entities in PDB 4GEK

Entity #1 | Chains: A,G
tRNA (cmo5U34)-methyltransferase protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35428
95 % 1 1 30410 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 29154
70 % 1 3 11635
50 % 1 3 10398
40 % 1 3 9376
30 % 1 3 8063

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4GEK 1 A, G tRNA (cmo5U34)-methyltransferase 562 2.1.1 | Details
2 4IWN 1 A, B tRNA (cmo5U34)-methyltransferase UNP residues 19-247 562 2.1.1 | Details
3 1IM8 1 A, B YecO 727 2.1.1 | Details