Sequence Similarity Clusters for the Entities in PDB 4GEK

Entity #1 | Chains: A,G
tRNA (cmo5U34)-methyltransferase protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33924
95 % 1 1 29142 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 27983
70 % 1 3 11129
50 % 1 3 9969
40 % 1 3 9006
30 % 1 3 7757

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4GEK 1 A, G tRNA (cmo5U34)-methyltransferase 562 2.1.1 | Details
2 4IWN 1 A, B tRNA (cmo5U34)-methyltransferase UNP residues 19-247 562 2.1.1 | Details
3 1IM8 1 A, B YecO 727 2.1.1 | Details