Sequence Similarity Clusters for the Entities in PDB 4GEK

Entity #1 | Chains: A,G
tRNA (cmo5U34)-methyltransferase protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34675
95 % 1 1 29772 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 28559
70 % 1 3 11376
50 % 1 3 10188
40 % 1 3 9198
30 % 1 3 7920

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4GEK 1 A, G tRNA (cmo5U34)-methyltransferase 562 2.1.1 | Details
2 4IWN 1 A, B tRNA (cmo5U34)-methyltransferase UNP residues 19-247 562 2.1.1 | Details
3 1IM8 1 A, B YecO 727 2.1.1 | Details