Sequence Similarity Clusters for the Entities in PDB 4GDL

Entity #1 | Chains: A
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 10327
95 % 3 3 10327
90 % 3 3 10192
70 % 3 3 9656
50 % 3 3 8773
40 % 4 4 6318
30 % 5 5 5227
Entity #2 | Chains: B
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 5372
95 % 6 6 4192
90 % 6 6 4212
70 % 6 6 4122
50 % 6 6 3995
40 % 6 6 3825
30 % 6 6 3529
Entity #3 | Chains: C
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 10399
95 % 3 3 10395
90 % 3 3 10261
70 % 3 3 9722
50 % 3 3 8835
40 % 3 3 8089
30 % 3 3 7121

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.