Sequence Similarity Clusters for the Entities in PDB 4GDL

Entity #1 | Chains: A
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 10665
95 % 3 3 10678
90 % 3 3 10546
70 % 3 3 10029
50 % 3 3 9077
40 % 4 4 6534
30 % 5 5 5407
Entity #2 | Chains: B
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 5574
95 % 6 6 4332
90 % 6 6 4359
70 % 6 6 4280
50 % 6 6 4130
40 % 6 6 3941
30 % 6 6 3635
Entity #3 | Chains: C
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 10739
95 % 3 3 10747
90 % 3 3 10618
70 % 3 3 10098
50 % 3 3 9144
40 % 3 3 8377
30 % 3 3 7374

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.