Sequence Similarity Clusters for the Entities in PDB 4GDL

Entity #1 | Chains: A
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 10075
95 % 3 3 10067
90 % 3 3 9947
70 % 3 3 9431
50 % 3 3 8582
40 % 4 4 6172
30 % 5 5 5108
Entity #2 | Chains: B
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 5206
95 % 6 6 4094
90 % 6 6 4114
70 % 6 6 4030
50 % 6 6 3914
40 % 6 6 3745
30 % 6 6 3462
Entity #3 | Chains: C
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 10146
95 % 3 3 10135
90 % 3 3 10014
70 % 3 3 9495
50 % 3 3 8642
40 % 3 3 7916
30 % 3 3 6987

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.