Sequence Similarity Clusters for the Entities in PDB 4GDL

Entity #1 | Chains: A
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 10842
95 % 3 3 10838 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 10694
70 % 3 3 10146
50 % 3 3 9182
40 % 4 4 6625
30 % 5 5 5485
Entity #2 | Chains: B
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 2999
95 % 6 8 2930 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 6 8 2978
70 % 6 8 2944
50 % 6 8 2907
40 % 6 8 2869
30 % 6 8 2676
Entity #3 | Chains: C
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 10919
95 % 3 3 10912 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 3 10770
70 % 3 3 10218
50 % 3 3 9249
40 % 3 3 8473
30 % 3 3 7463

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.