Sequence Similarity Clusters for the Entities in PDB 4GDL

Entity #1 | Chains: A
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 10915
95 % 3 3 10577 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 10432
70 % 3 3 9858
50 % 3 3 8891
40 % 4 4 6408
30 % 5 5 5406
Entity #2 | Chains: B
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 3498
95 % 6 8 3015 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 6 8 3066
70 % 6 8 3016
50 % 6 8 2974
40 % 6 8 2895
30 % 6 8 2680
Entity #3 | Chains: C
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 10916
95 % 3 3 10578 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 3 10433
70 % 3 3 9859
50 % 3 3 8892
40 % 3 3 8063
30 % 3 3 6981

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures