Sequence Similarity Clusters for the Entities in PDB 4GDK

Entity #1 | Chains: A,D
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10608
95 % 2 3 10603 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 3 10466
70 % 2 3 9914
50 % 2 3 8972
40 % 3 4 6468
30 % 3 5 5354
Entity #2 | Chains: B,E
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 5546
95 % 3 6 4314 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 6 4341
70 % 3 6 4262
50 % 3 6 4111
40 % 3 6 3920
30 % 3 6 3613
Entity #3 | Chains: C,F
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10683
95 % 2 3 10675 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 3 10539
70 % 2 3 9982
50 % 2 3 9036
40 % 2 3 8283
30 % 2 3 7291

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.