Sequence Similarity Clusters for the Entities in PDB 4GDK

Entity #1 | Chains: A,D
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 9447
95 % 2 3 9512
90 % 2 3 9409
70 % 2 3 8933
50 % 2 3 8149
40 % 3 4 5875
30 % 3 5 4877
Entity #2 | Chains: B,E
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 4873
95 % 3 6 3840
90 % 3 6 3867
70 % 3 6 3803
50 % 3 6 3701
40 % 3 6 3542
30 % 3 6 3282
Entity #3 | Chains: C,F
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 9513
95 % 2 3 9579
90 % 2 3 9475
70 % 2 3 8999
50 % 2 3 8210
40 % 2 3 7549
30 % 2 3 6700

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.