Sequence Similarity Clusters for the Entities in PDB 4GDK

Entity #1 | Chains: A,D
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 10232
95 % 2 3 10232
90 % 2 3 10102
70 % 2 3 9584
50 % 2 3 8713
40 % 3 4 6264
30 % 3 5 5184
Entity #2 | Chains: B,E
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5336
95 % 3 6 4160
90 % 3 6 4183
70 % 3 6 4097
50 % 3 6 3972
40 % 3 6 3803
30 % 3 6 3509
Entity #3 | Chains: C,F
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 10303
95 % 2 3 10299
90 % 2 3 10169
70 % 2 3 9650
50 % 2 3 8774
40 % 2 3 8033
30 % 2 3 7080

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.