Sequence Similarity Clusters for the Entities in PDB 4GDK

Entity #1 | Chains: A,D
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 9641
95 % 2 3 9686
90 % 2 3 9573
70 % 2 3 9089
50 % 2 3 8282
40 % 3 4 5982
30 % 3 5 4953
Entity #2 | Chains: B,E
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 4989
95 % 3 6 3899
90 % 3 6 3932
70 % 3 6 3864
50 % 3 6 3762
40 % 3 6 3599
30 % 3 6 3331
Entity #3 | Chains: C,F
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 9706
95 % 2 3 9752
90 % 2 3 9639
70 % 2 3 9155
50 % 2 3 8345
40 % 2 3 7670
30 % 2 3 6789

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.