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An Information Portal to 108124 Biological Macromolecular Structures

Crystal Structure of Human Atg12~Atg5 Conjugate in Complex with an N-terminal Fragment of Atg16L1
Sequence Clustering and Redundancy Reduction Results
4GDK
Sequence Clusters for the Sequence Entities in PDB 4GDK
Entity #1: Chains: A,D - Ubiquitin-like protein ATG12 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 8275
95% 2 3 8408
90% 2 3 8329
70% 2 3 7958
50% 2 3 7274
40% 3 4 5277
30% 3 5 4398
Entity #2: Chains: B,E - Autophagy protein 5 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 4290
95% 3 5 4891
90% 3 5 4902
70% 3 5 4823
50% 3 5 4574
40% 3 5 4293
30% 3 5 3888
Entity #3: Chains: C,F - Autophagy-related protein 16-1 protein, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 8322
95% 2 3 8462
90% 2 3 8383
70% 2 3 8015
50% 2 3 7326
40% 2 3 6758
30% 2 3 6018
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.