Sequence Similarity Clusters for the Entities in PDB 4GDK

Entity #1 | Chains: A,D
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 9201
95 % 2 3 9257
90 % 2 3 9163
70 % 2 3 8713
50 % 2 3 7952
40 % 3 4 5765
30 % 3 5 4797
Entity #2 | Chains: B,E
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 4773
95 % 3 6 3757
90 % 3 6 3786
70 % 3 6 3731
50 % 3 6 3616
40 % 3 6 3469
30 % 3 6 3216
Entity #3 | Chains: C,F
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 9258
95 % 2 3 9322
90 % 2 3 9229
70 % 2 3 8780
50 % 2 3 8013
40 % 2 3 7380
30 % 2 3 6552

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.