Sequence Similarity Clusters for the Entities in PDB 4GDK

Entity #1 | Chains: A,D
Ubiquitin-like protein ATG12 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10889
95 % 2 3 10882 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 3 10736
70 % 2 3 10188
50 % 2 3 9221
40 % 3 4 6648
30 % 3 5 5505
Entity #2 | Chains: B,E
Autophagy protein 5 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 3022
95 % 3 8 2949 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 8 2998
70 % 3 8 2965
50 % 3 8 2923
40 % 3 8 2881
30 % 3 8 2688
Entity #3 | Chains: C,F
Autophagy-related protein 16-1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10966
95 % 2 3 10956 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 3 10812
70 % 2 3 10260
50 % 2 3 9288
40 % 2 3 8507
30 % 2 3 7492

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures