POP-OUT | CLOSE
 
Structure of E. coli hydrogenase-1 in complex with cytochrome b
Sequence Clustering and Redundancy Reduction Results
4GD3
Sequence Clusters for the Sequence Entities in PDB 4GD3
Entity #1: Chains: Q,R,S,T - Hydrogenase-1 small chain protein, length: 335 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 13734
95% 4 4 4942
90% 4 4 4963
70% 4 4 4889
50% 8 8 3295
40% 8 8 3185
30% 8 8 2946
Entity #2: Chains: J,K,L,M - Hydrogenase-1 large chain protein, length: 582 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 4182
95% 4 4 4784
90% 4 4 4804
70% 4 4 4728
50% 13 13 1577
40% 38 39 516
30% 51 52 403
Entity #3: Chains: A,B - Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 29118
95% 1 1 22604
90% 1 1 21914
70% 1 1 19968
50% 1 1 17300
40% 1 1 15319
30% 1 1 13030
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.