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Structure of E. coli hydrogenase-1 in complex with cytochrome b
Sequence Clustering and Redundancy Reduction Results
4GD3
Sequence Clusters for the Sequence Entities in PDB 4GD3
Entity #1: Chains: Q,R,S,T - Hydrogenase-1 small chain protein, length: 335 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 15132
95% 5 5 4451
90% 5 5 4485
70% 5 5 4445
50% 10 10 2955
40% 10 10 2884
30% 10 10 2688
Entity #2: Chains: J,K,L,M - Hydrogenase-1 large chain protein, length: 582 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 4683
95% 5 5 4246
90% 5 5 4283
70% 5 5 4256
50% 15 15 1544
40% 56 57 330
30% 69 70 294
Entity #3: Chains: A,B - Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 31954
95% 1 1 24694
90% 1 1 23884
70% 1 1 21702
50% 1 1 18716
40% 1 1 16569
30% 1 1 14058
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.