Sequence Similarity Clusters for the Entities in PDB 4GD3

Entity #1 | Chains: Q,R,S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 16816
95 % 8 8 3081
90 % 8 8 3125
70 % 8 8 3106
50 % 14 14 2204
40 % 14 14 2202
30 % 14 14 2100
Entity #2 | Chains: J,K,L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 3963
95 % 9 9 2651
90 % 9 9 2692
70 % 9 9 2686
50 % 20 20 1310
40 % 61 62 344
30 % 74 75 303
Entity #3 | Chains: A,B
Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 35342
95 % 1 1 27196
90 % 1 1 26272
70 % 1 1 23810
50 % 1 1 20440
40 % 1 1 18024
30 % 1 1 15263

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.