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Structure of E. coli hydrogenase-1 in complex with cytochrome b
Sequence Clustering and Redundancy Reduction Results
4GD3
Sequence Clusters for the Sequence Entities in PDB 4GD3
Entity #1: Chains: Q,R,S,T - Hydrogenase-1 small chain protein, length: 335 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 13896
95% 4 4 5014
90% 4 4 5036
70% 4 4 4954
50% 8 8 3341
40% 8 8 3222
30% 8 8 2984
Entity #2: Chains: J,K,L,M - Hydrogenase-1 large chain protein, length: 582 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 4242
95% 4 4 4848
90% 4 4 4868
70% 4 4 4786
50% 13 13 1632
40% 43 44 436
30% 56 57 365
Entity #3: Chains: A,B - Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 29481
95% 1 1 22876
90% 1 1 22173
70% 1 1 20218
50% 1 1 17506
40% 1 1 15510
30% 1 1 13179
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.