Sequence Similarity Clusters for the Entities in PDB 4GD3

Entity #1 | Chains: Q,R,S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19615
95 % 11 11 2574 Flexibility: No
Max RMSD: 9.8, Avg RMSD: 0.5
PDBFlex
90 % 11 11 2632
70 % 11 11 2624
50 % 20 20 1825
40 % 20 20 1825
30 % 20 20 1774
Entity #2 | Chains: J,K,L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 4710
95 % 12 12 2319 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 12 2378
70 % 12 12 2385
50 % 26 26 1210
40 % 70 71 405
30 % 88 89 319
Entity #3 | Chains: A,B
Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40662
95 % 1 1 31219 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 30089
70 % 1 1 27056
50 % 1 1 23081
40 % 1 1 20320
30 % 1 1 17215

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures