Sequence Similarity Clusters for the Entities in PDB 4GD3

Entity #1 | Chains: Q,R,S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18862
95 % 11 11 2467 Flexibility: No
Max RMSD: 9.8, Avg RMSD: 0.5
PDBFlex
90 % 11 11 2525
70 % 11 11 2514
50 % 17 17 1939
40 % 17 17 1940
30 % 17 17 1879
Entity #2 | Chains: J,K,L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 4512
95 % 12 12 2211 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 12 2269
70 % 12 12 2268
50 % 23 23 1248
40 % 64 65 400
30 % 82 83 327
Entity #3 | Chains: A,B
Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39329
95 % 1 1 30249 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 29186
70 % 1 1 26293
50 % 1 1 22455
40 % 1 1 19782
30 % 1 1 16766

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.