Sequence Similarity Clusters for the Entities in PDB 4GD3

Entity #1 | Chains: Q,R,S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 16537
95 % 8 8 3039
90 % 8 8 3086
70 % 8 8 3064
50 % 14 14 2165
40 % 14 14 2171
30 % 14 14 2066
Entity #2 | Chains: J,K,L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 3890
95 % 9 9 2609
90 % 9 9 2654
70 % 9 9 2644
50 % 20 20 1288
40 % 61 62 339
30 % 74 75 298
Entity #3 | Chains: A,B
Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 34828
95 % 1 1 26805
90 % 1 1 25894
70 % 1 1 23467
50 % 1 1 20166
40 % 1 1 17797
30 % 1 1 15079

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.