POP-OUT | CLOSE

An Information Portal to 108395 Biological Macromolecular Structures

Structure of E. coli hydrogenase-1 in complex with cytochrome b
Sequence Clustering and Redundancy Reduction Results
4GD3
Sequence Clusters for the Sequence Entities in PDB 4GD3
Entity #1: Chains: Q,R,S,T - Hydrogenase-1 small chain protein, length: 335 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 14570
95% 5 5 4242
90% 5 5 4272
70% 5 5 4265
50% 10 10 2862
40% 10 10 2805
30% 10 10 2603
Entity #2: Chains: J,K,L,M - Hydrogenase-1 large chain protein, length: 582 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 4501
95% 5 5 4033
90% 5 5 4066
70% 5 5 4075
50% 15 15 1497
40% 56 57 318
30% 69 70 289
Entity #3: Chains: A,B - Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 30888
95% 1 1 23909
90% 1 1 23155
70% 1 1 21087
50% 1 1 18205
40% 1 1 16124
30% 1 1 13691
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.