Sequence Similarity Clusters for the Entities in PDB 4GD3

Entity #1 | Chains: Q,R,S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18580
95 % 11 11 2429
90 % 11 11 2487
70 % 11 11 2478
50 % 17 17 1914
40 % 17 17 1917
30 % 17 17 1858
Entity #2 | Chains: J,K,L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 4407
95 % 12 12 2180
90 % 12 12 2237
70 % 12 12 2240
50 % 23 23 1231
40 % 64 65 397
30 % 82 83 320
Entity #3 | Chains: A,B
Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38776
95 % 1 1 29829
90 % 1 1 28782
70 % 1 1 25965
50 % 1 1 22194
40 % 1 1 19545
30 % 1 1 16558

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.