Sequence Similarity Clusters for the Entities in PDB 4GD3

Entity #1 | Chains: Q,R,S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15740
95 % 8 8 2891
90 % 8 8 2939
70 % 8 8 2928
50 % 13 13 2206
40 % 13 13 2200
30 % 13 13 2080
Entity #2 | Chains: J,K,L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 3689
95 % 9 9 2474
90 % 9 9 2516
70 % 9 9 2523
50 % 19 19 1264
40 % 60 61 318
30 % 73 74 284
Entity #3 | Chains: A,B
Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33285
95 % 1 1 25666
90 % 1 1 24798
70 % 1 1 22480
50 % 1 1 19343
40 % 1 1 17100
30 % 1 1 14490

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.