Sequence Similarity Clusters for the Entities in PDB 4GD3

Entity #1 | Chains: Q,R,S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18104
95 % 9 9 2952 Flexibility: No
Max RMSD: 9.9, Avg RMSD: 0.4
PDBFlex
90 % 9 9 3000
70 % 9 9 2987
50 % 15 15 2184
40 % 15 15 2177
30 % 15 15 2081
Entity #2 | Chains: J,K,L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 4276
95 % 10 10 2631 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 10 10 2679
70 % 10 10 2657
50 % 21 21 1326
40 % 62 63 389
30 % 80 81 322
Entity #3 | Chains: A,B
Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37892
95 % 1 1 29160
90 % 1 1 28148
70 % 1 1 25447
50 % 1 1 21785
40 % 1 1 19187
30 % 1 1 16249

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.