Sequence Similarity Clusters for the Entities in PDB 4GCT

Entity #1 | Chains: A,B,C,D
Nucleoid occlusion factor SlmA protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 8966
95 % 3 3 9140 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 3 3 9046
70 % 3 3 8638
50 % 6 10 1485
40 % 6 10 1507
30 % 6 10 1486
Entity #2 | Chains: W,Z
DNA (5'-D(*TP*TP*AP*CP*GP*TP*GP*AP*GP*TP*AP*CP*TP*CP*AP*CP*GP*TP*AP*A)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.