Sequence Similarity Clusters for the Entities in PDB 4GCK

Entity #1 | Chains: A,B,C,D
Nucleoid occlusion factor SlmA protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12557
95 % 1 7 1912 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 1 7 1960
70 % 1 7 1981
50 % 3 10 1485
40 % 3 10 1506
30 % 3 10 1485
Entity #2 | Chains: W,Z
DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*TP*CP*AP*C)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.