Sequence Similarity Clusters for the Entities in PDB 4GBX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41576
95 % 4 5 10519 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 4 5 10379
70 % 4 6 8824
50 % 4 6 7989
40 % 4 6 7336
30 % 225 310 99
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41726
95 % 4 5 10520 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 4 5 10380
70 % 4 6 8825
50 % 4 6 7990
40 % 4 6 7337
30 % 226 310 99
Entity #3 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21799
95 % 64 81 295 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 75 97 236
70 % 75 97 269
50 % 110 149 179
40 % 110 149 196
30 % 227 310 99
Entity #4 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21453
95 % 36 41 720 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 62 76 339
70 % 104 140 163
50 % 110 149 178
40 % 110 149 195
30 % 228 310 99
Entity #5 | Chains: E
synthetic peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.