Sequence Similarity Clusters for the Entities in PDB 4GBX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41028
95 % 4 5 10369
90 % 4 5 10242
70 % 4 6 8722
50 % 4 6 7901
40 % 4 6 7254
30 % 225 310 94
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41180
95 % 4 5 10370
90 % 4 5 10243
70 % 4 6 8723
50 % 4 6 7902
40 % 4 6 7255
30 % 226 310 94
Entity #3 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 21503
95 % 64 81 288
90 % 75 97 232
70 % 75 97 264
50 % 110 149 176
40 % 110 149 189
30 % 227 310 94
Entity #4 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 21160
95 % 36 41 713
90 % 62 76 331
70 % 104 140 161
50 % 110 149 175
40 % 110 149 188
30 % 228 310 94
Entity #5 | Chains: E
synthetic peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.