Sequence Similarity Clusters for the Entities in PDB 4GBX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43085
95 % 4 5 10929 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 4 5 10786
70 % 4 6 9133
50 % 4 6 8267
40 % 4 6 7594
30 % 249 334 98
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43238
95 % 4 5 10930 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 4 5 10787
70 % 4 6 9134
50 % 4 6 8268
40 % 4 6 7595
30 % 250 334 98
Entity #3 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 22717
95 % 72 89 282 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 83 105 237
70 % 83 105 267
50 % 122 161 184
40 % 122 161 195
30 % 251 334 98
Entity #4 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 22363
95 % 36 41 753 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 70 84 328
70 % 116 152 161
50 % 122 161 183
40 % 122 161 194
30 % 252 334 98
Entity #5 | Chains: E
synthetic peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures