Sequence Similarity Clusters for the Entities in PDB 4GBX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 35245
95 % 4 5 8817
90 % 4 5 8722
70 % 4 6 7440
50 % 4 6 6787
40 % 4 6 6262
30 % 203 282 68
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 35379
95 % 4 5 8818
90 % 4 5 8723
70 % 4 6 7441
50 % 4 6 6788
40 % 4 6 6263
30 % 204 282 68
Entity #3 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 18301
95 % 57 72 292
90 % 68 88 178
70 % 68 88 206
50 % 99 135 166
40 % 99 135 182
30 % 205 282 68
Entity #4 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 17993
95 % 35 40 530
90 % 56 70 309
70 % 93 126 152
50 % 99 135 165
40 % 99 135 181
30 % 206 282 68
Entity #5 | Chains: E
synthetic peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.