Sequence Similarity Clusters for the Entities in PDB 4GBX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39705
95 % 4 5 9987
90 % 4 5 9861
70 % 4 6 8402
50 % 4 6 7637
40 % 4 6 7013
30 % 219 304 83
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39850
95 % 4 5 9988
90 % 4 5 9862
70 % 4 6 8403
50 % 4 6 7638
40 % 4 6 7014
30 % 220 304 83
Entity #3 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 20733
95 % 61 78 288
90 % 72 94 229
70 % 72 94 264
50 % 107 146 173
40 % 107 146 186
30 % 221 304 83
Entity #4 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 20401
95 % 36 41 681
90 % 59 73 337
70 % 101 137 163
50 % 107 146 172
40 % 107 146 185
30 % 222 304 83
Entity #5 | Chains: E
synthetic peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.