Sequence Similarity Clusters for the Entities in PDB 4GBX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37161
95 % 4 5 9348
90 % 4 5 9244
70 % 4 6 7859
50 % 4 6 7160
40 % 4 6 6615
30 % 205 286 74
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37300
95 % 4 5 9349
90 % 4 5 9245
70 % 4 6 7860
50 % 4 6 7161
40 % 4 6 6616
30 % 206 286 74
Entity #3 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 19346
95 % 58 74 299
90 % 69 90 208
70 % 69 90 240
50 % 100 137 176
40 % 100 137 190
30 % 207 286 74
Entity #4 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 19031
95 % 36 41 557
90 % 57 71 322
70 % 94 128 161
50 % 100 137 175
40 % 100 137 189
30 % 208 286 74
Entity #5 | Chains: E
synthetic peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.