Sequence Similarity Clusters for the Entities in PDB 4GBX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 36873
95 % 4 5 9264
90 % 4 5 9169
70 % 4 6 7787
50 % 4 6 7103
40 % 4 6 6553
30 % 205 286 73
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37010
95 % 4 5 9265
90 % 4 5 9170
70 % 4 6 7788
50 % 4 6 7104
40 % 4 6 6554
30 % 206 286 73
Entity #3 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 19187
95 % 58 74 295
90 % 69 90 205
70 % 69 90 239
50 % 100 137 173
40 % 100 137 187
30 % 207 286 73
Entity #4 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 18874
95 % 36 41 550
90 % 57 71 320
70 % 94 128 160
50 % 100 137 172
40 % 100 137 186
30 % 208 286 73
Entity #5 | Chains: E
synthetic peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.