POP-OUT | CLOSE

An Information Portal to 111558 Biological Macromolecular Structures

Crystal structure of an immune complex at pH 6.5
Sequence Clustering and Redundancy Reduction Results
4GBX
Sequence Clusters for the Sequence Entities in PDB 4GBX
Entity #1: Chains: C - HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 33769
95% 4 5 8473
90% 4 5 8383
70% 4 6 7158
50% 4 6 6544
40% 4 6 6044
30% 199 276 62
Entity #2: Chains: D - HLA class II histocompatibility antigen, DM beta chain protein, length: 199 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 33902
95% 4 5 8474
90% 4 5 8384
70% 4 6 7159
50% 4 6 6545
40% 4 6 6045
30% 200 276 62
Entity #3: Chains: A - HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 17560
95% 56 70 289
90% 67 86 175
70% 67 86 203
50% 97 132 154
40% 97 132 172
30% 201 276 62
Entity #4: Chains: B - HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 17267
95% 35 40 509
90% 55 68 307
70% 91 123 148
50% 97 132 153
40% 97 132 171
30% 202 276 62
Entity #5: Chains: E - synthetic peptide protein, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.