Sequence Similarity Clusters for the Entities in PDB 4GBX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 36037
95 % 4 5 9006
90 % 4 5 8913
70 % 4 6 7593
50 % 4 6 6933
40 % 4 6 6400
30 % 205 286 69
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 36173
95 % 4 5 9007
90 % 4 5 8914
70 % 4 6 7594
50 % 4 6 6934
40 % 4 6 6401
30 % 206 286 69
Entity #3 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 18728
95 % 58 74 289
90 % 69 90 176
70 % 69 90 208
50 % 100 137 170
40 % 100 137 185
30 % 207 286 69
Entity #4 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 18415
95 % 36 41 534
90 % 57 71 314
70 % 94 128 156
50 % 100 137 169
40 % 100 137 184
30 % 208 286 69
Entity #5 | Chains: E
synthetic peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.