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Crystal structure of an immune complex at pH 6.5
Sequence Clustering and Redundancy Reduction Results
4GBX
Sequence Clusters for the Sequence Entities in PDB 4GBX
Entity #1: Chains: C - HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30825
95% 4 5 7782
90% 4 5 7712
70% 4 6 6567
50% 4 6 6040
40% 4 6 5579
30% 193 268 47
Entity #2: Chains: D - HLA class II histocompatibility antigen, DM beta chain protein, length: 199 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30948
95% 4 5 7783
90% 4 5 7713
70% 4 6 6568
50% 4 6 6041
40% 4 6 5580
30% 194 268 47
Entity #3: Chains: A - HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 16008
95% 56 70 231
90% 67 86 142
70% 67 86 167
50% 94 128 123
40% 94 128 152
30% 195 268 47
Entity #4: Chains: B - HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 15730
95% 35 40 473
90% 55 68 262
70% 89 120 104
50% 94 128 122
40% 94 128 151
30% 196 268 47
Entity #5: Chains: E - synthetic peptide protein, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.