Sequence Similarity Clusters for the Entities in PDB 4GBX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40383
95 % 4 5 10194 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 4 5 10065
70 % 4 6 8557
50 % 4 6 7751
40 % 4 6 7120
30 % 219 304 99
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40532
95 % 4 5 10195 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 4 5 10066
70 % 4 6 8558
50 % 4 6 7752
40 % 4 6 7121
30 % 220 304 99
Entity #3 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 21108
95 % 61 78 296
90 % 72 94 235
70 % 72 94 270
50 % 107 146 175
40 % 107 146 191
30 % 221 304 99
Entity #4 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 20770
95 % 36 41 698 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 59 73 344
70 % 101 137 164
50 % 107 146 174
40 % 107 146 190
30 % 222 304 99
Entity #5 | Chains: E
synthetic peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.