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Crystal structure of an immune complex at pH 6.5
Sequence Clustering and Redundancy Reduction Results
4GBX
Sequence Clusters for the Sequence Entities in PDB 4GBX
Entity #1: Chains: C - HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 32554
95% 4 5 8176
90% 4 5 8096
70% 4 6 6922
50% 4 6 6342
40% 4 6 5858
30% 195 270 59
Entity #2: Chains: D - HLA class II histocompatibility antigen, DM beta chain protein, length: 199 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 32681
95% 4 5 8177
90% 4 5 8097
70% 4 6 6923
50% 4 6 6343
40% 4 6 5859
30% 196 270 59
Entity #3: Chains: A - HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 16914
95% 56 70 272
90% 67 86 172
70% 67 86 197
50% 95 129 142
40% 95 129 168
30% 197 270 59
Entity #4: Chains: B - HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 16630
95% 35 40 489
90% 55 68 291
70% 89 120 126
50% 95 129 141
40% 95 129 167
30% 198 270 59
Entity #5: Chains: E - synthetic peptide protein, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.