Sequence Similarity Clusters for the Entities in PDB 4GAY

Entity #1 | Chains: A,H
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21695
95 % 3 3 18827 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 10 12 3694
70 % 1699 2376 2
50 % 3526 4913 1
40 % 3526 4913 1
30 % 4155 5780 1
Entity #2 | Chains: B,L
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21696
95 % 28 40 772 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 61 103 153
70 % 1738 2426 1
50 % 3527 4913 1
40 % 3527 4913 1
30 % 4156 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures