Sequence Similarity Clusters for the Entities in PDB 4GAY

Entity #1 | Chains: A,H
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21154
95 % 3 3 18410 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 10 12 3593
70 % 1621 2280 2
50 % 3362 4713 1
40 % 3362 4713 1
30 % 3980 5567 1
Entity #2 | Chains: B,L
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21155
95 % 27 39 767 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 58 99 154
70 % 1657 2327 1
50 % 3363 4713 1
40 % 3363 4713 1
30 % 3981 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.