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Complex structure of Methane monooxygenase hydroxylase and regulatory subunit
Sequence Clustering and Redundancy Reduction Results
4GAM
Sequence Clusters for the Sequence Entities in PDB 4GAM
Entity #1: Chains: B,G,L,Q - Methane monooxygenase component A beta chain protein, length: 389 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 23 533
95% 26 27 610
90% 26 27 639
70% 26 27 696
50% 28 29 744
40% 28 29 773
30% 28 29 774
Entity #2: Chains: A,F,K,P - Methane monooxygenase component A alpha chain protein, length: 527 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 13123
95% 26 27 605
90% 26 27 633
70% 28 29 666
50% 28 29 742
40% 28 29 772
30% 28 29 773
Entity #3: Chains: C,H,M,R - Methane monooxygenase component A gamma chain protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 25 471
95% 26 27 626
90% 26 27 656
70% 26 27 706
50% 28 29 752
40% 28 29 785
30% 28 29 783
Entity #4: Chains: D,I,N,S - Methane monooxygenase regulatory protein B protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 12224
95% 1 2 11602
90% 1 2 11413
70% 1 2 10795
50% 1 3 8580
40% 1 3 7817
30% 1 3 6885
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.