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Complex structure of Methane monooxygenase hydroxylase and regulatory subunit
Sequence Clustering and Redundancy Reduction Results
4GAM
Sequence Clusters for the Sequence Entities in PDB 4GAM
Entity #1: Chains: B,G,L,Q - Methane monooxygenase component A beta chain protein, length: 389 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 23 505
95% 26 27 581
90% 26 27 616
70% 26 27 667
50% 28 29 709
40% 28 29 736
30% 28 29 738
Entity #2: Chains: A,F,K,P - Methane monooxygenase component A alpha chain protein, length: 527 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 12582
95% 26 27 576
90% 26 27 610
70% 28 29 632
50% 28 29 707
40% 28 29 735
30% 28 29 737
Entity #3: Chains: C,H,M,R - Methane monooxygenase component A gamma chain protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 25 451
95% 26 27 595
90% 26 27 626
70% 26 27 674
50% 28 29 723
40% 28 29 751
30% 28 29 751
Entity #4: Chains: D,I,N,S - Methane monooxygenase regulatory protein B protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 11714
95% 1 2 11221
90% 1 2 11040
70% 1 2 10434
50% 1 3 8307
40% 1 3 7567
30% 1 3 6692
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.