Sequence Similarity Clusters for the Entities in PDB 4GAM

Entity #1 | Chains: B,G,L,Q
Methane monooxygenase component A beta chain protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 23 779
95 % 26 27 908 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 26 27 942
70 % 26 27 974
50 % 28 29 987
40 % 28 29 1012
30 % 28 29 990
Entity #2 | Chains: A,F,K,P
Methane monooxygenase component A alpha chain protein, length: 527 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17052
95 % 26 27 900 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 26 27 934
70 % 28 29 944
50 % 28 29 982
40 % 28 29 1009
30 % 28 29 987
Entity #3 | Chains: C,H,M,R
Methane monooxygenase component A gamma chain protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 25 733
95 % 26 27 925 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 26 27 957
70 % 26 27 986
50 % 28 29 996
40 % 28 29 1023
30 % 28 29 999
Entity #4 | Chains: D,I,N,S
Methane monooxygenase regulatory protein B protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15801
95 % 1 2 14793 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 2 14520
70 % 1 2 13632
50 % 1 3 10748
40 % 1 3 9746
30 % 1 3 8501

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures