Sequence Similarity Clusters for the Entities in PDB 4GAM

Entity #1 | Chains: B,G,L,Q
Methane monooxygenase component A beta chain protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 23 655
95 % 26 27 770
90 % 26 27 806
70 % 26 27 851
50 % 28 29 862
40 % 28 29 885
30 % 28 29 877
Entity #2 | Chains: A,F,K,P
Methane monooxygenase component A alpha chain protein, length: 527 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15084
95 % 26 27 766
90 % 26 27 802
70 % 28 29 819
50 % 28 29 860
40 % 28 29 883
30 % 28 29 874
Entity #3 | Chains: C,H,M,R
Methane monooxygenase component A gamma chain protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 25 613
95 % 26 27 784
90 % 26 27 821
70 % 26 27 862
50 % 28 29 868
40 % 28 29 898
30 % 28 29 887
Entity #4 | Chains: D,I,N,S
Methane monooxygenase regulatory protein B protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 14022
95 % 1 2 13212
90 % 1 2 12972
70 % 1 2 12202
50 % 1 3 9683
40 % 1 3 8802
30 % 1 3 7705

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.