Sequence Similarity Clusters for the Entities in PDB 4GAM

Entity #1 | Chains: B,G,L,Q
Methane monooxygenase component A beta chain protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 23 593
95 % 26 27 659
90 % 26 27 692
70 % 26 27 746
50 % 28 29 798
40 % 28 29 827
30 % 28 29 820
Entity #2 | Chains: A,F,K,P
Methane monooxygenase component A alpha chain protein, length: 527 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14126
95 % 26 27 653
90 % 26 27 686
70 % 28 29 720
50 % 28 29 796
40 % 28 29 825
30 % 28 29 818
Entity #3 | Chains: C,H,M,R
Methane monooxygenase component A gamma chain protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 25 531
95 % 26 27 674
90 % 26 27 709
70 % 26 27 759
50 % 28 29 805
40 % 28 29 838
30 % 28 29 828
Entity #4 | Chains: D,I,N,S
Methane monooxygenase regulatory protein B protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 13134
95 % 1 2 12426
90 % 1 2 12191
70 % 1 2 11492
50 % 1 3 9120
40 % 1 3 8303
30 % 1 3 7289

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.