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Complex structure of Methane monooxygenase hydroxylase and regulatory subunit
Sequence Clustering and Redundancy Reduction Results
4GAM
Sequence Clusters for the Sequence Entities in PDB 4GAM
Entity #1: Chains: B,G,L,Q - Methane monooxygenase component A beta chain protein, length: 389 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 23 551
95% 26 27 633
90% 26 27 664
70% 26 27 719
50% 28 29 770
40% 28 29 796
30% 28 29 798
Entity #2: Chains: A,F,K,P - Methane monooxygenase component A alpha chain protein, length: 527 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 13531
95% 26 27 626
90% 26 27 656
70% 28 29 685
50% 28 29 768
40% 28 29 794
30% 28 29 796
Entity #3: Chains: C,H,M,R - Methane monooxygenase component A gamma chain protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 25 496
95% 26 27 646
90% 26 27 678
70% 26 27 731
50% 28 29 779
40% 28 29 809
30% 28 29 807
Entity #4: Chains: D,I,N,S - Methane monooxygenase regulatory protein B protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 12594
95% 1 2 11934
90% 1 2 11723
70% 1 2 11059
50% 1 3 8785
40% 1 3 8005
30% 1 3 7040
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.