Sequence Similarity Clusters for the Entities in PDB 4GAM

Entity #1 | Chains: B,G,L,Q
Methane monooxygenase component A beta chain protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 23 706
95 % 26 27 827
90 % 26 27 860
70 % 26 27 896
50 % 28 29 907
40 % 28 29 932
30 % 28 29 919
Entity #2 | Chains: A,F,K,P
Methane monooxygenase component A alpha chain protein, length: 527 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15734
95 % 26 27 819
90 % 26 27 852
70 % 28 29 863
50 % 28 29 901
40 % 28 29 930
30 % 28 29 916
Entity #3 | Chains: C,H,M,R
Methane monooxygenase component A gamma chain protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 25 663
95 % 26 27 843
90 % 26 27 877
70 % 26 27 907
50 % 28 29 916
40 % 28 29 943
30 % 28 29 928
Entity #4 | Chains: D,I,N,S
Methane monooxygenase regulatory protein B protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 14624
95 % 1 2 13726
90 % 1 2 13479
70 % 1 2 12645
50 % 1 3 10014
40 % 1 3 9073
30 % 1 3 7922

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.