Sequence Similarity Clusters for the Entities in PDB 4GAM

Entity #1 | Chains: B,G,L,Q
Methane monooxygenase component A beta chain protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 23 957
95 % 26 27 966 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 26 27 993
70 % 26 27 1031
50 % 28 29 1043
40 % 28 29 1059
30 % 28 29 1049
Entity #2 | Chains: A,F,K,P
Methane monooxygenase component A alpha chain protein, length: 527 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 25 839
95 % 26 27 965 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 26 27 992
70 % 28 29 999
50 % 28 29 1042
40 % 28 29 1058
30 % 28 29 1048
Entity #3 | Chains: C,H,M,R
Methane monooxygenase component A gamma chain protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 25 852
95 % 26 27 967 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 26 27 994
70 % 26 27 1032
50 % 28 29 1044
40 % 28 29 1060
30 % 28 29 1050
Entity #4 | Chains: D,I,N,S
Methane monooxygenase regulatory protein B protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15441
95 % 1 2 14398 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 2 14133
70 % 1 2 13223
50 % 1 3 9909
40 % 1 3 8954
30 % 1 3 7718

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures