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Complex structure of Methane monooxygenase hydroxylase and regulatory subunit
Sequence Clustering and Redundancy Reduction Results
4GAM
Sequence Clusters for the Sequence Entities in PDB 4GAM
Entity #1: Chains: B,G,L,Q - Methane monooxygenase component A beta chain protein, length: 389 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 23 535
95% 26 27 616
90% 26 27 644
70% 26 27 701
50% 28 29 753
40% 28 29 782
30% 28 29 785
Entity #2: Chains: A,F,K,P - Methane monooxygenase component A alpha chain protein, length: 527 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 13260
95% 26 27 611
90% 26 27 638
70% 28 29 669
50% 28 29 751
40% 28 29 780
30% 28 29 783
Entity #3: Chains: C,H,M,R - Methane monooxygenase component A gamma chain protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 25 481
95% 26 27 631
90% 26 27 661
70% 26 27 712
50% 28 29 762
40% 28 29 794
30% 28 29 793
Entity #4: Chains: D,I,N,S - Methane monooxygenase regulatory protein B protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 12346
95% 1 2 11698
90% 1 2 11510
70% 1 2 10877
50% 1 3 8646
40% 1 3 7878
30% 1 3 6932
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.