Sequence Similarity Clusters for the Entities in PDB 4GAJ

Entity #1 | Chains: H
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21001
95 % 2 3 18291 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 8 12 3563
70 % 1431 2244 2
50 % 2960 4633 1
40 % 2960 4633 1
30 % 3445 5461 1
Entity #2 | Chains: L
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21002
95 % 24 39 763 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.5
PDBFlex
90 % 50 99 152
70 % 1457 2287 1
50 % 2961 4633 1
40 % 2961 4633 1
30 % 3446 5461 1
Entity #3 | Chains: P
Genome polyprotein protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.