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An Information Portal to 106082 Biological Macromolecular Structures

Structure of the broadly neutralizing antibody AP33 in complex with its HCV epitope (E2 residues 411-424)
Sequence Clustering and Redundancy Reduction Results
4GAJ
Sequence Clusters for the Sequence Entities in PDB 4GAJ
Entity #1: Chains: H - NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 16055
95% 2 3 14192
90% 5 9 3828
70% 1016 1528 2
50% 2108 3170 1
40% 2109 3171 1
30% 2432 3753 1
Entity #2: Chains: L - NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 16056
95% 14 29 816
90% 33 65 269
70% 890 1332 3
50% 2109 3170 1
40% 2110 3171 1
30% 2433 3753 1
Entity #3: Chains: P - Genome polyprotein protein, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.