Sequence Similarity Clusters for the Entities in PDB 4GAG

Entity #1 | Chains: H
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21273
95 % 1 3 18507 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 12 3619
70 % 210 2311 2
50 % 431 4781 1
40 % 431 4781 1
30 % 464 5635 1
Entity #2 | Chains: L
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21274
95 % 1 39 780 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 3 101 155
70 % 208 2362 1
50 % 432 4781 1
40 % 432 4781 1
30 % 465 5635 1
Entity #3 | Chains: P
Genome polyprotein protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4GAG 2 L NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN 10090
2 5DQD 1 L S55-5 Fab (IgG1 kappa) light chain 10090
3 3ZKM 3 D, L FAB LIGHT CHAIN 10090
4 4WCY 2 L AZ130 Light chain 10090
5 4ODS 2 L S55-3 Fab (IgG2b) heavy chain 10090
6 5DQ9 2 B, D, L MAb 44B1 light chain 10090
7 4NJ9 1 L 8B10 light chain 10090
8 3ZKN 3 D, L FAB LIGHT CHAIN 10090
9 5X2M 4 K, L Fab16A Light chain 10090
10 2Y5T 2 B CIIC1 FAB FRAGMENT LIGHT CHAIN DISULFIDE BRIDGE BETWEEN B23 AND B92, B138 AND B198 10090
11 2VL5 2 B, D CIIC1 ANTICOLLAGEN FAB 10090
12 5X2N 4 K, L Fab16A Light chain 10090
13 3S35 2 L 6.64 Fab light chain 10090
14 4NJA 1 L 6C8 light chain 10090
15 3WKM 3 L, M MOUSE IGG1-KAPPA FAB (LIGHT CHAIN) 10090
16 5X2Q 4 K, L Fab16A Light chain 10090
17 5X2P 4 K, L Fab16A Light chain 10090
18 5X2O 4 K, L Fab16A Light chain 10090
19 5DQJ 1 B, L S55-5 Fab (IgG1 kappa) light chain 10090
20 1EJO 1 L IGG2A MONOCLONAL ANTIBODY (LIGHT CHAIN) FAB FRAGMENT 10090
21 1GGI 1 L, M IGG2A 50.1 FAB (LIGHT CHAIN) 10090
22 1GGC 1 L IGG2A-KAPPA 50.1 FAB (LIGHT CHAIN) 10090
23 1GGB 1 L IGG2A-KAPPA 50.1 FAB (LIGHT CHAIN) 10090
24 4GAJ 2 L NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN 10090
25 1EGJ 2 L ANTIBODY (LIGHT CHAIN) 10090
26 1AI1 1 L IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) 10090
27 4GAY 2 B, L NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN Fab fragment of AP33 light chain 10090
28 1ACY 1 L IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) 10090
29 3QUM 4 A, C Fab 5D5A5 Light Chain 10090
30 2R29 3 L Light chain of Fab 1A1D-2 10090
31 3BSZ 3 L, M Fab fragment heavy chain 10090
32 3TT3 2 L mouse monoclonal 1gG1 Fab fragment, heavy chain 10090
33 4FFZ 2 L, Y DENV1-E111 fab fragment (light chain) 10090
34 4QEX 2 L, M Antibody Light Chain 10090
35 2R69 3 L Light chain of 1A1D-2 Fab 10090
36 3J2X 1 A, C, E, G m242 light chain Fab 10090
37 3J30 1 A, C, E, G CHK152 light chain Fab 10090
38 2R6P 3 E, G Light chain of 1A1D-2 10090
39 1QGC 4 4 PROTEIN (IMMUNOGLOBULIN LIGHT CHAIN) FAB 10090