Sequence Similarity Clusters for the Entities in PDB 4GAG

Entity #1 | Chains: H
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18510
95 % 1 3 16969 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 14 2792
70 % 234 2511 2
50 % 482 5180 1
40 % 597 5834 1
30 % 727 7269 1
Entity #2 | Chains: L
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18511
95 % 2 40 785 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 5 109 148
70 % 232 2553 1
50 % 483 5180 1
40 % 598 5834 1
30 % 728 7269 1
Entity #3 | Chains: P
Genome polyprotein protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4GAG 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
2 4GAJ 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
3 4GAY 1 A, H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN Fab fragment of AP33 heavy chain 10090