Sequence Similarity Clusters for the Entities in PDB 4GAG

Entity #1 | Chains: H
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21273
95 % 1 3 18507 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 12 3619
70 % 210 2311 2
50 % 431 4781 1
40 % 431 4781 1
30 % 464 5635 1
Entity #2 | Chains: L
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21274
95 % 1 39 780 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 3 101 155
70 % 208 2362 1
50 % 432 4781 1
40 % 432 4781 1
30 % 465 5635 1
Entity #3 | Chains: P
Genome polyprotein protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3D9A 3 H Heavy Chain of HyHel10 Antibody Fragment (Fab) 10090
2 4POZ 2 D heavy chain of Fab fragment of 10B9 antibody 10090
3 4GAG 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
4 1GPO 2 H, I ANTIBODY M41 FAB FRAGMENT 10090
5 1DQD 2 H FAB HGR-2 F6 HEAVY CHAIN 10090
6 4PP2 2 B, D heavy chain of Fab fragment of 10B9 antibody 10090
7 5VCO 2 B, D HEAVY CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY 10090
8 4GAJ 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
9 3KS0 2 H, K Fragment Antigen Binding B2B4 10090
10 4GAY 1 A, H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN Fab fragment of AP33 heavy chain 10090
11 1NAK 2 H, I Fab 83.1 - heavy chain 10090
12 3HFM 2 H HYHEL-10 IGG1 FAB (HEAVY CHAIN) 10090