Sequence Similarity Clusters for the Entities in PDB 4GAG

Entity #1 | Chains: H
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18602
95 % 1 3 17066 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 14 2831
70 % 240 2532 2
50 % 496 5226 1
40 % 616 5890 1
30 % 746 7330 1
Entity #2 | Chains: L
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18603
95 % 2 40 796 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 5 109 148
70 % 238 2576 1
50 % 497 5226 1
40 % 617 5890 1
30 % 747 7330 1
Entity #3 | Chains: P
Genome polyprotein protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3D9A 3 H Heavy Chain of HyHel10 Antibody Fragment (Fab) 10090
2 4POZ 2 D heavy chain of Fab fragment of 10B9 antibody 10090
3 4GAG 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
4 5VJQ 1 A, C, E, G HyHEL10 heavy chain Fab fragment carrying three mutations; I29F, S52T, Y53F DEL-I 10090 3.2.1.18 | Details
5 1GPO 2 H, I ANTIBODY M41 FAB FRAGMENT 10090
6 1DQD 2 H FAB HGR-2 F6 HEAVY CHAIN 10090
7 4PP2 2 B, D heavy chain of Fab fragment of 10B9 antibody 10090
8 5VCO 2 B, D HEAVY CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY 10090
9 4GAJ 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
10 3KS0 2 H, K Fragment Antigen Binding B2B4 10090
11 5VJO 1 A, C HyHEL10 heavy chain Fab fragment carrying I29F mutation. DEL-I 10090 3.2.1.18 | Details
12 4GAY 1 A, H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN Fab fragment of AP33 heavy chain 10090
13 1NAK 2 H, I Fab 83.1 - heavy chain 10090
14 3HFM 2 H HYHEL-10 IGG1 FAB (HEAVY CHAIN) 10090