Sequence Similarity Clusters for the Entities in PDB 4GAG

Entity #1 | Chains: H
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 19101
95 % 1 3 17525 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 14 2885
70 % 246 2593 2
50 % 508 5348 1
40 % 628 6031 1
30 % 760 7494 1
Entity #2 | Chains: L
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 19102
95 % 2 40 819 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 5 109 153
70 % 244 2634 1
50 % 509 5348 1
40 % 629 6031 1
30 % 761 7494 1
Entity #3 | Chains: P
Genome polyprotein protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3D9A 3 H Heavy Chain of HyHel10 Antibody Fragment (Fab) 10090
2 4POZ 2 D heavy chain of Fab fragment of 10B9 antibody 10090
3 4GAG 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
4 5VJQ 1 A, C, E, G HyHEL10 heavy chain Fab fragment carrying three mutations; I29F, S52T, Y53F DEL-I 10090 3.2.1.18 | Details
5 1GPO 2 H, I ANTIBODY M41 FAB FRAGMENT 10090
6 1DQD 2 H FAB HGR-2 F6 HEAVY CHAIN 10090
7 4PP2 2 B, D heavy chain of Fab fragment of 10B9 antibody 10090
8 5VCO 2 B, D HEAVY CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY 10090
9 4GAJ 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
10 3KS0 2 H, K Fragment Antigen Binding B2B4 10090
11 5VJO 1 A, C HyHEL10 heavy chain Fab fragment carrying I29F mutation. DEL-I 10090 3.2.1.18 | Details
12 4GAY 1 A, H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN Fab fragment of AP33 heavy chain 10090
13 1NAK 2 H, I Fab 83.1 - heavy chain 10090
14 3HFM 2 H HYHEL-10 IGG1 FAB (HEAVY CHAIN) 10090