Sequence Similarity Clusters for the Entities in PDB 4GAG

Entity #1 | Chains: H
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18743
95 % 1 3 17181 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 14 2848
70 % 241 2550 2
50 % 498 5263 1
40 % 618 5933 1
30 % 750 7388 1
Entity #2 | Chains: L
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18744
95 % 2 40 803 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 5 109 151
70 % 238 2593 1
50 % 499 5263 1
40 % 619 5933 1
30 % 751 7388 1
Entity #3 | Chains: P
Genome polyprotein protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4GAG 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
2 4GAJ 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
3 4GAY 1 A, H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN Fab fragment of AP33 heavy chain 10090