Sequence Similarity Clusters for the Entities in PDB 4GAG

Entity #1 | Chains: H
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18383
95 % 1 3 16860 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 14 2776
70 % 233 2478 2
50 % 478 5107 1
40 % 592 5756 1
30 % 719 7175 1
Entity #2 | Chains: L
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18384
95 % 2 40 783 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 4 108 147
70 % 231 2519 1
50 % 479 5107 1
40 % 593 5756 1
30 % 720 7175 1
Entity #3 | Chains: P
Genome polyprotein protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4GAG 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
2 4GAJ 1 H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 10090
3 4GAY 1 A, H NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN Fab fragment of AP33 heavy chain 10090