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An Information Portal to 106858 Biological Macromolecular Structures

Structure of the broadly neutralizing antibody AP33 in complex with its HCV epitope (E2 residues 412-423)
Sequence Clustering and Redundancy Reduction Results
4GAG
Sequence Clusters for the Sequence Entities in PDB 4GAG
Entity #1: Chains: H - NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 16209
95% 1 3 14289
90% 2 9 3857
70% 126 1535 2
50% 257 3184 1
40% 257 3185 1
30% 279 3767 1
Entity #2: Chains: L - NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 16210
95% 1 29 834
90% 1 65 278
70% 102 1337 3
50% 258 3184 1
40% 258 3185 1
30% 280 3767 1
Entity #3: Chains: P - Genome polyprotein protein, length: 12 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.