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An Information Portal to 111749 Biological Macromolecular Structures

Structure of the broadly neutralizing antibody AP33 in complex with its HCV epitope (E2 residues 412-423)
Sequence Clustering and Redundancy Reduction Results
4GAG
Sequence Clusters for the Sequence Entities in PDB 4GAG
Entity #1: Chains: H - NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 17066
95% 1 3 15016
90% 3 11 3366
70% 144 1682 1
50% 293 3477 1
40% 293 3478 1
30% 318 4103 1
Entity #2: Chains: L - NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 17067
95% 1 30 855
90% 1 67 278
70% 115 1454 3
50% 294 3477 1
40% 294 3478 1
30% 319 4103 1
Entity #3: Chains: P - Genome polyprotein protein, length: 12 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.