POP-OUT | CLOSE

An Information Portal to 108607 Biological Macromolecular Structures

Structure of the broadly neutralizing antibody AP33 in complex with its HCV epitope (E2 residues 412-423)
Sequence Clustering and Redundancy Reduction Results
4GAG
Sequence Clusters for the Sequence Entities in PDB 4GAG
Entity #1: Chains: H - NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 16477
95% 1 3 14493
90% 3 11 3211
70% 132 1580 2
50% 269 3274 1
40% 269 3275 1
30% 292 3863 1
Entity #2: Chains: L - NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 16478
95% 1 29 856
90% 1 65 285
70% 106 1377 3
50% 270 3274 1
40% 270 3275 1
30% 293 3863 1
Entity #3: Chains: P - Genome polyprotein protein, length: 12 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.