Sequence Similarity Clusters for the Entities in PDB 4G6D

Entity #1 | Chains: A
RNA polymerase sigma factor rpoD protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71406
95 % 1 1 49563
90 % 1 1 47050
70 % 1 2 30439
50 % 2 7 7091
40 % 2 7 6590
30 % 2 7 5877
Entity #2 | Chains: B
ORF067 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21515
95 % 2 3 18641 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.2
PDBFlex
90 % 2 3 18164
70 % 2 3 16797
50 % 2 3 14594
40 % 2 3 12996
30 % 2 3 11126

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.