Sequence Similarity Clusters for the Entities in PDB 4G6D

Entity #1 | Chains: A
RNA polymerase sigma factor rpoD protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72289
95 % 1 1 50159
90 % 1 1 47573
70 % 1 2 30763
50 % 2 7 7177
40 % 2 7 6670
30 % 2 7 5946
Entity #2 | Chains: B
ORF067 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21794
95 % 2 3 18863 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.2
PDBFlex
90 % 2 3 18379
70 % 2 3 16998
50 % 2 3 14757
40 % 2 3 13136
30 % 2 3 11250

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures