Sequence Similarity Clusters for the Entities in PDB 4G6D

Entity #1 | Chains: A
RNA polymerase sigma factor rpoD protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58674
95 % 1 1 47984
90 % 1 1 45566
70 % 1 2 26156
50 % 2 6 8020
40 % 2 6 7340
30 % 2 6 6388
Entity #2 | Chains: B
ORF067 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 18781
95 % 2 3 17177 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.2
PDBFlex
90 % 2 3 16780
70 % 2 3 15584
50 % 2 3 13663
40 % 2 3 12226
30 % 2 3 10331

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures