Sequence Similarity Clusters for the Entities in PDB 4G6D

Entity #1 | Chains: A
RNA polymerase sigma factor rpoD protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70374
95 % 1 1 48790
90 % 1 1 46332
70 % 1 2 30128
50 % 2 7 6975
40 % 2 7 6489
30 % 2 7 5786
Entity #2 | Chains: B
ORF067 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21185
95 % 2 3 18338 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 2 3 17867
70 % 2 3 16543
50 % 2 3 14385
40 % 2 3 12810
30 % 2 3 10961

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.