Sequence Similarity Clusters for the Entities in PDB 4G3Y

Entity #1 | Chains: L
infliximab Fab L protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 15607
95 % 3 3 14628
90 % 34 38 696
70 % 1210 2392 1
50 % 2473 4843 1
40 % 2473 4843 1
30 % 2819 5705 1
Entity #2 | Chains: H
infliximab Fab H protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 15524
95 % 3 3 14548
90 % 4 4 12338
70 % 1199 2342 2
50 % 2474 4843 1
40 % 2474 4843 1
30 % 2820 5705 1
Entity #3 | Chains: C
Tumor necrosis factor protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 462
95 % 10 21 333 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 10 21 353
70 % 11 22 383
50 % 11 22 448
40 % 11 22 482
30 % 17 34 387

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures