Sequence Similarity Clusters for the Entities in PDB 4G3Y

Entity #1 | Chains: L
infliximab Fab L protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15510
95 % 3 3 14312 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.5
PDBFlex
90 % 34 38 702
70 % 1281 2538 1
50 % 2626 5152 1
40 % 3008 5806 1
30 % 3690 7240 1
Entity #2 | Chains: H
infliximab Fab H protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15349
95 % 3 3 14313 Flexibility: Medium
Max RMSD: 5.0, Avg RMSD: 3.1
PDBFlex
90 % 4 4 13600
70 % 1273 2497 2
50 % 2627 5152 1
40 % 3009 5806 1
30 % 3691 7240 1
Entity #3 | Chains: C
Tumor necrosis factor protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 428
95 % 10 22 332 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 10 22 347
70 % 11 23 381
50 % 11 23 450
40 % 11 23 477
30 % 26 61 263

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures