Sequence Similarity Clusters for the Entities in PDB 4G1M

Entity #1 | Chains: A
Integrin alpha-V protein, length: 959 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 5572
95 % 1 14 4564 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 1 14 4587
70 % 1 14 4494
50 % 1 14 4317
40 % 1 14 4117
30 % 1 16 3207
Entity #2 | Chains: B
Integrin beta-3 protein, length: 692 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 6902
95 % 1 16 3658 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 1 16 3711
70 % 1 16 3662
50 % 1 16 3562
40 % 2 22 1730
30 % 2 22 1690

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.