Sequence Similarity Clusters for the Entities in PDB 4G1M

Entity #1 | Chains: A
Integrin alpha-V protein, length: 959 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 11210
95 % 1 14 4884 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 1 14 4926
70 % 1 14 4804
50 % 1 14 4591
40 % 1 14 4331
30 % 1 16 3288
Entity #2 | Chains: B
Integrin beta-3 protein, length: 692 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 13 4995
95 % 1 16 3941 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 1 16 4000
70 % 1 16 3920
50 % 1 16 3817
40 % 2 22 1860
30 % 2 22 1783

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures