Sequence Similarity Clusters for the Entities in PDB 4G1M

Entity #1 | Chains: A
Integrin alpha-V protein, length: 959 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 5789
95 % 1 14 4743 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 1 14 4772
70 % 1 14 4667
50 % 1 14 4471
40 % 1 14 4248
30 % 1 16 3315
Entity #2 | Chains: B
Integrin beta-3 protein, length: 692 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 7157
95 % 1 16 3799 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 1 16 3859
70 % 1 16 3806
50 % 1 16 3691
40 % 2 22 1799
30 % 2 22 1754

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures