Sequence Similarity Clusters for the Entities in PDB 4G1E

Entity #1 | Chains: A
Integrin alpha-V protein, length: 998 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 11143
95 % 5 14 4864 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 5 14 4904
70 % 5 14 4776
50 % 5 14 4564
40 % 5 14 4305
30 % 6 16 3279
Entity #2 | Chains: B
Integrin beta-3 protein, length: 738 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53831
95 % 6 16 3926 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 6 16 3981
70 % 6 16 3906
50 % 6 16 3805
40 % 8 22 1845
30 % 8 22 1773

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures