Sequence Similarity Clusters for the Entities in PDB 4G1E

Entity #1 | Chains: A
Integrin alpha-V protein, length: 998 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 11 5597
95 % 5 14 4583 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 5 14 4612
70 % 5 14 4517
50 % 5 14 4339
40 % 5 14 4138
30 % 6 16 3220
Entity #2 | Chains: B
Integrin beta-3 protein, length: 738 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50449
95 % 6 16 3680 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 6 16 3734
70 % 6 16 3683
50 % 6 16 3578
40 % 8 22 1742
30 % 8 22 1699

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures