Sequence Similarity Clusters for the Entities in PDB 4G0W

Entity #1 | Chains: A,B
DNA topoisomerase 2-beta protein, length: 803 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 3775
95 % 6 7 4563 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 6 7 4586
70 % 6 9 3656
50 % 6 9 3555
40 % 6 14 2667
30 % 6 14 2506
Entity #2 | Chains: C,E
DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,F
DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.