Sequence Similarity Clusters for the Entities in PDB 4G0W

Entity #1 | Chains: A,B
DNA topoisomerase 2-beta protein, length: 803 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 3805
95 % 6 7 4592 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 6 7 4621
70 % 6 9 3679
50 % 6 9 3573
40 % 6 14 2692
30 % 6 14 2526
Entity #2 | Chains: C,E
DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,F
DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures