Sequence Similarity Clusters for the Entities in PDB 4G0U

Entity #1 | Chains: A,B
DNA topoisomerase 2-beta protein, length: 803 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 4718
95 % 4 7 5037 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 4 7 5066
70 % 4 9 3878
50 % 4 9 3779
40 % 4 14 2815
30 % 4 14 2598
Entity #2 | Chains: C,E
DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,F
DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures