Sequence Similarity Clusters for the Entities in PDB 4G01

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein 9A protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 8021
95 % 3 5 8084 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 5 8015
70 % 3 5 7774
50 % 3 5 7137
40 % 3 5 6596
30 % 4 7 4939
Entity #2 | Chains: B
Ras-related protein RABF2b protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 8020
95 % 3 5 8083 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.0
PDBFlex
90 % 3 5 8014
70 % 3 5 7773
50 % 20 27 1364
40 % 337 531 20
30 % 492 884 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2EFH 2 B, D Small GTP-binding protein-like GTPase domain 3702
2 2EFC 2 B, D Small GTP-binding protein-like GTPase domain 3702
3 4G01 2 B Ras-related protein RABF2b small GTPase, UNP residues 1-179 3702
4 2EFE 2 B, D Small GTP-binding protein-like GTPase domain 3702
5 2EFD 2 B, D Small GTP-binding protein-like GTPase domain 3702