Sequence Similarity Clusters for the Entities in PDB 4G01

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein 9A protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10357
95 % 3 5 7718 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 5 7668
70 % 3 5 7462
50 % 3 5 6872
40 % 3 5 6387
30 % 4 7 4866
Entity #2 | Chains: B
Ras-related protein RABF2b protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7305
95 % 3 5 7881 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 3 5 7828
70 % 3 5 7593
50 % 20 26 1301
40 % 278 451 21
30 % 427 782 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2EFH 2 B, D Small GTP-binding protein-like GTPase domain 3702
2 2EFC 2 B, D Small GTP-binding protein-like GTPase domain 3702
3 4G01 2 B Ras-related protein RABF2b small GTPase, UNP residues 1-179 3702
4 2EFE 2 B, D Small GTP-binding protein-like GTPase domain 3702
5 2EFD 2 B, D Small GTP-binding protein-like GTPase domain 3702