Sequence Similarity Clusters for the Entities in PDB 4G01

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein 9A protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10570
95 % 3 5 7867 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 5 7813
70 % 3 5 7595
50 % 3 5 6998
40 % 3 5 6501
30 % 4 7 4951
Entity #2 | Chains: B
Ras-related protein RABF2b protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7466
95 % 3 5 8028 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 3 5 7967
70 % 3 5 7725
50 % 20 26 1329
40 % 297 478 21
30 % 448 817 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2EFH 2 B, D Small GTP-binding protein-like GTPase domain 3702
2 2EFC 2 B, D Small GTP-binding protein-like GTPase domain 3702
3 4G01 2 B Ras-related protein RABF2b small GTPase, UNP residues 1-179 3702
4 2EFE 2 B, D Small GTP-binding protein-like GTPase domain 3702
5 2EFD 2 B, D Small GTP-binding protein-like GTPase domain 3702