Sequence Similarity Clusters for the Entities in PDB 4G01

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein 9A protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 8236
95 % 3 5 8302 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 5 8224
70 % 3 5 7972
50 % 3 5 7282
40 % 3 5 6718
30 % 4 7 5022
Entity #2 | Chains: B
Ras-related protein RABF2b protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 8235
95 % 3 5 8301 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.0
PDBFlex
90 % 3 5 8223
70 % 3 5 7971
50 % 20 28 1383
40 % 350 546 22
30 % 519 918 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2EFH 2 B, D Small GTP-binding protein-like GTPase domain 3702
2 2EFC 2 B, D Small GTP-binding protein-like GTPase domain 3702
3 4G01 2 B Ras-related protein RABF2b small GTPase, UNP residues 1-179 3702
4 2EFE 2 B, D Small GTP-binding protein-like GTPase domain 3702
5 2EFD 2 B, D Small GTP-binding protein-like GTPase domain 3702