Sequence Similarity Clusters for the Entities in PDB 4G01

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein 9A protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7825
95 % 3 5 7905 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 5 7843
70 % 3 5 7608
50 % 3 5 6984
40 % 3 5 6455
30 % 4 7 4834
Entity #2 | Chains: B
Ras-related protein RABF2b protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7824
95 % 3 5 7904 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.0
PDBFlex
90 % 3 5 7842
70 % 3 5 7607
50 % 20 27 1332
40 % 306 492 23
30 % 460 837 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2EFH 2 B, D Small GTP-binding protein-like GTPase domain 3702
2 2EFC 2 B, D Small GTP-binding protein-like GTPase domain 3702
3 4G01 2 B Ras-related protein RABF2b small GTPase, UNP residues 1-179 3702
4 2EFE 2 B, D Small GTP-binding protein-like GTPase domain 3702
5 2EFD 2 B, D Small GTP-binding protein-like GTPase domain 3702