Sequence Similarity Clusters for the Entities in PDB 4G01

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein 9A protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10346
95 % 3 5 7712 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 5 7661
70 % 3 5 7456
50 % 3 5 6865
40 % 3 5 6378
30 % 4 7 4861
Entity #2 | Chains: B
Ras-related protein RABF2b protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7295
95 % 3 5 7874 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 3 5 7820
70 % 3 5 7586
50 % 20 26 1299
40 % 278 451 21
30 % 427 782 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2EFH 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702
2 2EFC 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702
3 4G01 1 A Vacuolar protein sorting-associated protein 9A VPS9 domain, UNP residues 1-265 3702
4 2EFE 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702
5 2EFD 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702