Sequence Similarity Clusters for the Entities in PDB 4G01

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein 9A protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10773
95 % 3 5 7999 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 5 7941
70 % 3 5 7715
50 % 3 5 7109
40 % 3 5 6599
30 % 4 7 5023
Entity #2 | Chains: B
Ras-related protein RABF2b protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7593
95 % 3 5 8164 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 3 5 8099
70 % 3 5 7846
50 % 20 26 1346
40 % 300 483 21
30 % 451 822 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2EFH 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702
2 2EFC 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702
3 4G01 1 A Vacuolar protein sorting-associated protein 9A VPS9 domain, UNP residues 1-265 3702
4 2EFE 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702
5 2EFD 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702