Sequence Similarity Clusters for the Entities in PDB 4G01

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein 9A protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10507
95 % 3 5 7829 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 5 7777
70 % 3 5 7559
50 % 3 5 6964
40 % 3 5 6471
30 % 4 7 4928
Entity #2 | Chains: B
Ras-related protein RABF2b protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7424
95 % 3 5 7990 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 3 5 7931
70 % 3 5 7689
50 % 20 26 1320
40 % 293 473 21
30 % 444 812 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2EFH 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702
2 2EFC 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702
3 4G01 1 A Vacuolar protein sorting-associated protein 9A VPS9 domain, UNP residues 1-265 3702
4 2EFE 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702
5 2EFD 1 A, C Similarity to vacuolar protein sorting-associated protein VPS9 Vps9 domain 3702