Sequence Similarity Clusters for the Entities in PDB 4G01

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein 9A protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7868
95 % 3 5 7941 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 5 7878
70 % 3 5 7643
50 % 3 5 7018
40 % 3 5 6489
30 % 4 7 4853
Entity #2 | Chains: B
Ras-related protein RABF2b protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7867
95 % 3 5 7940 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.0
PDBFlex
90 % 3 5 7877
70 % 3 5 7642
50 % 20 27 1339
40 % 306 492 25
30 % 473 851 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures