Sequence Similarity Clusters for the Entities in PDB 4FXD

Entity #1 | Chains: A,B
DNA polymerase alpha catalytic subunit A protein, length: 910 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16997
95 % 4 4 11369 Flexibility: Medium
Max RMSD: 5.8, Avg RMSD: 3.8
PDBFlex
90 % 4 4 11222
70 % 4 4 10633
50 % 4 4 9618
40 % 4 4 8806
30 % 8 8 3929
Entity #2 | Chains: C,D
DNA (5'-D(*TP*TP*TP*TP*CP*GP*CP*TP*GP*CP*CP*CP*GP*CP*CP*T)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E,F
RNA (5'-R(*AP*GP*GP*CP*GP*GP*GP*CP*AP*G)-3') rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures