Sequence Similarity Clusters for the Entities in PDB 4FXD

Entity #1 | Chains: A,B
DNA polymerase alpha catalytic subunit A protein, length: 910 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16181
95 % 4 4 10862 Flexibility: Medium
Max RMSD: 5.8, Avg RMSD: 3.8
PDBFlex
90 % 4 4 10725
70 % 4 4 10189
50 % 4 4 9220
40 % 4 4 8448
30 % 7 7 4047
Entity #2 | Chains: C,D
DNA (5'-D(*TP*TP*TP*TP*CP*GP*CP*TP*GP*CP*CP*CP*GP*CP*CP*T)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E,F
RNA (5'-R(*AP*GP*GP*CP*GP*GP*GP*CP*AP*G)-3') rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.