Sequence Similarity Clusters for the Entities in PDB 4FWF

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 796 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 5109
95 % 7 10 4710 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 7 10 4739
70 % 7 10 4619
50 % 7 10 4435
40 % 7 10 4183
30 % 7 10 3781
Entity #2 | Chains: E
Histone H3.1 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 10880
95 % 5 7 11051
90 % 24 36 901
70 % 24 36 930
50 % 24 36 978
40 % 24 36 995
30 % 24 36 993

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures