Sequence Similarity Clusters for the Entities in PDB 4FWF

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 796 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 4065
95 % 7 10 4192 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.1
PDBFlex
90 % 7 10 4219
70 % 7 10 4144
50 % 7 10 3994
40 % 7 10 3823
30 % 7 10 3541
Entity #2 | Chains: E
Histone H3.1 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 24192
95 % 22 34 874
90 % 22 34 908
70 % 22 34 941
50 % 22 34 990
40 % 22 34 1011
30 % 22 34 985

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.