Sequence Similarity Clusters for the Entities in PDB 4FQX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36104
95 % 3 5 9029
90 % 3 5 8935
70 % 3 6 7611
50 % 3 6 6949
40 % 3 6 6416
30 % 121 286 70
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36240
95 % 3 5 9030
90 % 3 5 8936
70 % 3 6 7612
50 % 3 6 6950
40 % 3 6 6417
30 % 122 286 70
Entity #3 | Chains: E
Synthetic peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 18767
95 % 38 74 289
90 % 43 90 176
70 % 43 90 208
50 % 59 137 170
40 % 59 137 185
30 % 123 286 70
Entity #5 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 18454
95 % 21 41 534
90 % 37 71 314
70 % 57 128 158
50 % 59 137 169
40 % 59 137 184
30 % 124 286 70

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.