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Crystal structure of HLA-DM bound to HLA-DR1
Sequence Clustering and Redundancy Reduction Results
4FQX
Sequence Clusters for the Sequence Entities in PDB 4FQX
Entity #1: Chains: C - HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30673
95% 3 5 7750
90% 3 5 7683
70% 3 6 6538
50% 3 6 6013
40% 3 6 5553
30% 113 268 47
Entity #2: Chains: D - HLA class II histocompatibility antigen, DM beta chain protein, length: 199 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30795
95% 3 5 7751
90% 3 5 7684
70% 3 6 6539
50% 3 6 6014
40% 3 6 5554
30% 114 268 47
Entity #3: Chains: E - Synthetic peptide protein, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 15930
95% 36 70 230
90% 41 86 142
70% 41 86 166
50% 55 128 123
40% 55 128 152
30% 115 268 47
Entity #5: Chains: B - HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 15651
95% 20 40 468
90% 35 68 260
70% 53 120 103
50% 55 128 122
40% 55 128 151
30% 116 268 47
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.