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Crystal structure of HLA-DM bound to HLA-DR1
Sequence Clustering and Redundancy Reduction Results
4FQX
Sequence Clusters for the Sequence Entities in PDB 4FQX
Entity #1: Chains: C - HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31929
95% 3 5 8041
90% 3 5 7966
70% 3 6 6803
50% 3 6 6242
40% 3 6 5767
30% 113 270 57
Entity #2: Chains: D - HLA class II histocompatibility antigen, DM beta chain protein, length: 199 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32054
95% 3 5 8042
90% 3 5 7967
70% 3 6 6804
50% 3 6 6243
40% 3 6 5768
30% 114 270 57
Entity #3: Chains: E - Synthetic peptide protein, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 16572
95% 36 70 258
90% 41 86 166
70% 41 86 191
50% 55 129 125
40% 55 129 156
30% 115 270 57
Entity #5: Chains: B - HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 16286
95% 20 40 483
90% 35 68 277
70% 53 120 112
50% 55 129 124
40% 55 129 155
30% 116 270 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.