Sequence Similarity Clusters for the Entities in PDB 4FQX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40661
95 % 3 5 10274
90 % 3 5 10145
70 % 3 6 8625
50 % 3 6 7813
40 % 3 6 7180
30 % 133 304 100
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40810
95 % 3 5 10275
90 % 3 5 10146
70 % 3 6 8626
50 % 3 6 7814
40 % 3 6 7181
30 % 134 304 100
Entity #3 | Chains: E
Synthetic peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21262
95 % 41 78 297 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 46 94 237
70 % 46 94 270
50 % 65 146 178
40 % 65 146 194
30 % 135 304 100
Entity #5 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 20925
95 % 21 41 704 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 39 73 344
70 % 63 137 163
50 % 65 146 177
40 % 65 146 193
30 % 136 304 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.