Sequence Similarity Clusters for the Entities in PDB 4FQX

Entity #1 | Chains: C
HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38947
95 % 3 5 9779
90 % 3 5 9668
70 % 3 6 8224
50 % 3 6 7477
40 % 3 6 6872
30 % 129 296 99
Entity #2 | Chains: D
HLA class II histocompatibility antigen, DM beta chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39091
95 % 3 5 9780
90 % 3 5 9669
70 % 3 6 8225
50 % 3 6 7478
40 % 3 6 6873
30 % 130 296 99
Entity #3 | Chains: E
Synthetic peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 20302
95 % 40 76 300
90 % 45 92 230
70 % 45 92 263
50 % 63 142 177
40 % 63 142 191
30 % 131 296 99
Entity #5 | Chains: B
HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 19972
95 % 21 41 650
90 % 39 73 327
70 % 61 133 164
50 % 63 142 176
40 % 63 142 190
30 % 132 296 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.