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Crystal structure of HLA-DM bound to HLA-DR1
Sequence Clustering and Redundancy Reduction Results
4FQX
Sequence Clusters for the Sequence Entities in PDB 4FQX
Entity #1: Chains: C - HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32166
95% 3 5 8085
90% 3 5 8008
70% 3 6 6842
50% 3 6 6270
40% 3 6 5798
30% 113 270 59
Entity #2: Chains: D - HLA class II histocompatibility antigen, DM beta chain protein, length: 199 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32291
95% 3 5 8086
90% 3 5 8009
70% 3 6 6843
50% 3 6 6271
40% 3 6 5799
30% 114 270 59
Entity #3: Chains: E - Synthetic peptide protein, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 16726
95% 36 70 267
90% 41 86 172
70% 41 86 195
50% 55 129 142
40% 55 129 168
30% 115 270 59
Entity #5: Chains: B - HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 16441
95% 20 40 487
90% 35 68 286
70% 53 120 125
50% 55 129 141
40% 55 129 167
30% 116 270 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.