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Crystal structure of HLA-DM bound to HLA-DR1
Sequence Clustering and Redundancy Reduction Results
4FQX
Sequence Clusters for the Sequence Entities in PDB 4FQX
Entity #1: Chains: C - HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 33194
95% 3 5 8323
90% 3 5 8236
70% 3 6 7041
50% 3 6 6439
40% 3 6 5955
30% 115 276 57
Entity #2: Chains: D - HLA class II histocompatibility antigen, DM beta chain protein, length: 199 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 33326
95% 3 5 8324
90% 3 5 8237
70% 3 6 7042
50% 3 6 6440
40% 3 6 5956
30% 116 276 57
Entity #3: Chains: E - Synthetic peptide protein, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 17218
95% 36 70 277
90% 41 86 175
70% 41 86 202
50% 56 132 152
40% 56 132 169
30% 117 276 57
Entity #5: Chains: B - HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 16928
95% 20 40 501
90% 35 68 297
70% 54 123 147
50% 56 132 151
40% 56 132 168
30% 118 276 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.