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Crystal structure of HLA-DM bound to HLA-DR1
Sequence Clustering and Redundancy Reduction Results
4FQX
Sequence Clusters for the Sequence Entities in PDB 4FQX
Entity #1: Chains: C - HLA class II histocompatibility antigen, DM alpha chain protein, length: 203 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32639
95% 3 5 8188
90% 3 5 8107
70% 3 6 6930
50% 3 6 6347
40% 3 6 5866
30% 113 270 59
Entity #2: Chains: D - HLA class II histocompatibility antigen, DM beta chain protein, length: 199 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32768
95% 3 5 8189
90% 3 5 8108
70% 3 6 6931
50% 3 6 6348
40% 3 6 5867
30% 114 270 59
Entity #3: Chains: E - Synthetic peptide protein, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - HLA class II histocompatibility antigen, DR alpha chain protein, length: 191 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 16933
95% 36 70 272
90% 41 86 172
70% 41 86 197
50% 55 129 142
40% 55 129 168
30% 115 270 59
Entity #5: Chains: B - HLA class II histocompatibility antigen, DRB1-1 beta chain protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 16649
95% 20 40 491
90% 35 68 292
70% 53 120 126
50% 55 129 141
40% 55 129 167
30% 116 270 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.