Sequence Similarity Clusters for the Entities in PDB 4FQQ

Entity #1 | Chains: A,C,E,L
Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21764
95 % 9 19 1208 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 3.6
PDBFlex
90 % 28 64 350
70 % 1056 2416 1
50 % 2155 4892 1
40 % 2155 4892 1
30 % 2427 5759 1
Entity #2 | Chains: B,D,F,H
Fab heavy chain protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20981
95 % 2 2 12481 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 15 48 400
70 % 1042 2366 2
50 % 2156 4892 1
40 % 2156 4892 1
30 % 2428 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures