Sequence Similarity Clusters for the Entities in PDB 4FQQ

Entity #1 | Chains: A,C,E,L
Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21256
95 % 9 18 1202 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 3.6
PDBFlex
90 % 28 63 346
70 % 1006 2327 1
50 % 2055 4713 1
40 % 2055 4713 1
30 % 2317 5567 1
Entity #2 | Chains: B,D,F,H
Fab heavy chain protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20490
95 % 2 2 12243 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 13 44 407
70 % 994 2280 2
50 % 2056 4713 1
40 % 2056 4713 1
30 % 2318 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.