Sequence Similarity Clusters for the Entities in PDB 4FQQ

Entity #1 | Chains: A,C,E,L
Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18240
95 % 9 19 1277 Flexibility: Medium
Max RMSD: 10.4, Avg RMSD: 3.6
PDBFlex
90 % 26 61 382
70 % 1113 2553 1
50 % 2277 5180 1
40 % 2613 5834 1
30 % 3173 7269 1
Entity #2 | Chains: B,D,F,H
Fab heavy chain protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18239
95 % 2 2 12409 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 25 64 301
70 % 1102 2511 2
50 % 2278 5180 1
40 % 2614 5834 1
30 % 3174 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures