Sequence Similarity Clusters for the Entities in PDB 4FQQ

Entity #1 | Chains: A,C,E,L
Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22121
95 % 9 19 1229 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 3.6
PDBFlex
90 % 29 66 345
70 % 1088 2474 1
50 % 2221 5011 1
40 % 2221 5011 1
30 % 2532 5941 1
Entity #2 | Chains: B,D,F,H
Fab heavy chain protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21313
95 % 2 2 12688 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 15 49 404
70 % 1074 2424 2
50 % 2222 5011 1
40 % 2222 5011 1
30 % 2533 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures