Sequence Similarity Clusters for the Entities in PDB 4FQ1

Entity #1 | Chains: H
Fab heavy chain protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28080
95 % 3 3 24665 Flexibility: Medium
Max RMSD: 9.1, Avg RMSD: 6.3
PDBFlex
90 % 4 5 12819
70 % 1952 2593 2
50 % 4040 5348 1
40 % 4560 6031 1
30 % 5673 7494 1
Entity #2 | Chains: L
Fab light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27739
95 % 3 3 24411 Flexibility: Medium
Max RMSD: 9.8, Avg RMSD: 6.9
PDBFlex
90 % 9 35 1143
70 % 1986 2634 1
50 % 4041 5348 1
40 % 4561 6031 1
30 % 5674 7494 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures