Sequence Similarity Clusters for the Entities in PDB 4FNP

Entity #1 | Chains: A,B,C,D
Alpha-galactosidase AgaA protein, length: 729 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 7806
95 % 4 6 2961 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 4 6 3002
70 % 4 6 2967
50 % 4 6 2923
40 % 10 12 1726
30 % 10 12 1689

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures